9XYB image
Deposition Date 2025-08-25
Release Date 2026-04-15
Last Version Date 2026-04-29
Entry Detail
PDB ID:
9XYB
Keywords:
Title:
Crystal structure of a ZIKV E glycoprotein DI-DIII vaccine candidate in complex with human neutralizing antibody MZ4
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.85 Å
R-Value Free:
0.31
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Envelope protein E
Chain IDs:C (auth: E)
Chain Length:277
Number of Molecules:1
Biological Source:Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Human MZ4 Fab heavy chain
Chain IDs:A (auth: H)
Chain Length:219
Number of Molecules:1
Biological Source:Homo sapiens
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Human MZ4 Fab light chain
Chain IDs:B (auth: L)
Chain Length:214
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Targeting the Zika virus envelope domains I and III as a recombinant vaccine protects mice from lethal challenge.
Npj Vaccines ? ? ? (2026)
PMID: 41980974 DOI: 10.1038/s41541-026-01442-8

Abstact

Zika virus (ZIKV) vaccine candidates developed through Phase I clinical trials are based on the full-length envelope glycoprotein (E), which presents both desirable and undesirable antigenic determinants. Among the latter, the conserved fusion loop epitope (FLE) within domain II is a major target for flavivirus cross-reactive and poorly neutralizing responses. To eliminate unwanted FLE targeting, we redesigned ZIKV E using a reverse vaccinology approach, excising domain II and allowing domains I and III (DI-DIII) to fold into an independent subunit harboring key neutralizing epitopes. Ifnar1(-/-) mice vaccinated with ZIKV DI-DIII elicited high ZIKV neutralizing antibodies and were protected from weight loss and death. In addition, sera from DI-DIII vaccinated mice demonstrated a reduced capacity to enhance DENV 1-4 infection in vitro, compared to mice vaccinated with full-length E. This study identifies DI-DIII as a promising immunogen, focusing antibody responses to protective epitopes on ZIKV and minimizing the elicitation of unwanted responses.

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Primary Citation of related structures
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