ISDA: 9XID

Deposition Date 2025-11-02

Release Date 2026-10-14

Last Version Date 2026-10-14

Entry Detail

PDB ID:

9XID

Keywords:

VIRAL PROTEIN/IMMUNE SYSTEM

Title:

SARS-CoV-2 Omicron JD.1.1 spike trimer (S-6P) in complex with 3 R102-9 Fabs and 3 C092 Fabs, focused refinement of RBD and Fab region

Biological Source:

Source Organism(s):

Homo sapiens (Taxon ID: 9606)
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)

Expression System(s):

Homo sapiens

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.97 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Spike protein S1
Gene (Uniprot):S
Chain IDs:C (auth: A)
Chain Length:200
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTC2

Polymer Type:polypeptide(L)
Molecule:Light chain of R102-9 Fab
Chain IDs:E (auth: B)
Chain Length:215
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:Heavy chain of R102-9 Fab
Chain IDs:D
Chain Length:221
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:Heavy chain of C092 Fab
Chain IDs:A (auth: H)
Chain Length:228
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:Light chain of C092 Fab
Chain IDs:B (auth: L)
Chain Length:217
Number of Molecules:1
Biological Source:Homo sapiens

Ligand Molecules

Primary Citation

Artificial intelligence-driven discovery of ultrapotent and broadly neutralizing antibodies against SARS-CoV-2 from a long-lived public antibody lineage

Yan, Q, Huang, X, Liu, B, Yao, Y, Zheng, H, Song, Y, Wu, F, He, Z, Chen, F, Niu, C, Li, Z, Yuan, H, Chen, L, Zang, N, Xiao, J, Wang, T, Chen, C, Li, S, Bai, H, Li, J, Wu, M, Yao, J, Zhao, J, Yang, Y, Zhu, A, Xiong, X, Zhao, J.Show

To be published ? ? ? (?)

Primary Citation of related structures

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