9X5Z image
Deposition Date 2025-10-14
Release Date 2026-04-29
Last Version Date 2026-05-20
Entry Detail
PDB ID:
9X5Z
Title:
B/Phuket/3073/2013-like HA in complex with BP-1A
Biological Source:
Source Organism(s):
Influenza B virus (Taxon ID: 11520)
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.59 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin HA1 chain
Gene (Uniprot):HA
Chain IDs:A, C (auth: B), E (auth: C)
Chain Length:361
Number of Molecules:3
Biological Source:Influenza B virus
Protein Blast
Polymer Type:polypeptide(L)
Molecule:BP-1A heavy chain
Chain IDs:G (auth: H)
Chain Length:474
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin HA2 chain
Gene (Uniprot):HA
Chain IDs:B (auth: K), D (auth: M), F (auth: N)
Chain Length:238
Number of Molecules:3
Biological Source:Influenza B virus
Protein Blast
Polymer Type:polypeptide(L)
Molecule:BP-1A light chain
Chain IDs:H (auth: L)
Chain Length:233
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Broad neutralization of influenza B hemagglutinin antibodies via receptor mimicry and glycan engagement.
Proc.Natl.Acad.Sci.USA 123 e2532989123 e2532989123 (2026)
PMID: 42060718 DOI: 10.1073/pnas.2532989123

Abstact

Influenza B virus contributes to seasonal influenza epidemics and causes global morbidity and mortality. The two antigenically distinct lineages, Victoria and Yamagata, cocirculate within the population and are subject to ongoing antigenic drift. In this study, we report the isolation of cross-lineage neutralizing anti-influenza B hemagglutinin (HA) monoclonal antibodies, exhibiting hemagglutination-inhibition activities, from vaccinated adult donors. While some antibodies exhibit reduced activities against recently emerged antigenic variants, BP-1A and BO-6B demonstrate broad neutralization across influenza B viruses isolated over the past two decades and confer protection in mice against lethal challenge from both lineages. Structural analysis of the antibody Fab domains in complex with HA reveals two distinct molecular binding modes: BP-1A uses a long heavy chain CDR3 loop that mimics the ligand to target the receptor-binding site, while BO-6B engages a conserved cleft on the surface of vestigial esterase subdomain through key interactions with glycan moieties. These findings elucidate the molecular basis for broad neutralization by human anti-influenza B HA antibodies and provide insights that may guide the development of immunotherapeutics and rational vaccine design.

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Disease

Primary Citation of related structures
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