9X4I image
Deposition Date 2025-10-10
Release Date 2026-10-07
Last Version Date 2026-10-07
Entry Detail
PDB ID:
9X4I
Keywords:
Title:
Structure of the young Killifish Ribosome
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
2.56 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl39
Chain IDs:A (auth: 11)
Chain Length:51
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Ubiquitin-ribosomal protein e
Gene (Uniprot):UBA52
Chain IDs:B (auth: 21)
Chain Length:128
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S27
Gene (Uniprot):RPS27
Chain IDs:C (auth: 32)
Chain Length:84
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL28
Chain IDs:D (auth: 41)
Chain Length:137
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):RPS3A
Chain IDs:E (auth: 42)
Chain Length:266
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpl41
Chain IDs:F (auth: 51)
Chain Length:25
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L10
Gene (Uniprot):RPL10
Chain IDs:G (auth: 61)
Chain Length:215
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL11
Chain IDs:H (auth: 71)
Chain Length:178
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):RPS14
Chain IDs:I (auth: 72)
Chain Length:151
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL13A
Chain IDs:J (auth: 81)
Chain Length:205
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S26
Gene (Uniprot):rps26
Chain IDs:K (auth: 82)
Chain Length:142
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL30
Chain IDs:L (auth: 91)
Chain Length:116
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polyribonucleotide
Molecule:28S rRNA
Chain IDs:M (auth: A1)
Chain Length:4024
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S15
Gene (Uniprot):RPS15
Chain IDs:N (auth: A2)
Chain Length:145
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL3
Chain IDs:O (auth: B1)
Chain Length:403
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):RPS13
Chain IDs:P (auth: B2)
Chain Length:151
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L4
Gene (Uniprot):RPL4
Chain IDs:Q (auth: C1)
Chain Length:375
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polyribonucleotide
Molecule:18S rRNA
Chain IDs:R (auth: C2)
Chain Length:1838
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL31
Chain IDs:S (auth: D1)
Chain Length:124
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L32
Gene (Uniprot):RPL32
Chain IDs:T (auth: E1)
Chain Length:135
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL7
Chain IDs:U (auth: F1)
Chain Length:246
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL35
Chain IDs:V (auth: H1)
Chain Length:123
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S21
Gene (Uniprot):RPS21
Chain IDs:W (auth: H2)
Chain Length:83
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L36
Gene (Uniprot):RPL36
Chain IDs:X (auth: I1)
Chain Length:105
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L37
Gene (Uniprot):RPL37
Chain IDs:Y (auth: J1)
Chain Length:97
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):RPS2
Chain IDs:Z (auth: J2)
Chain Length:279
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL38
Chain IDs:AA (auth: K1)
Chain Length:70
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S8
Gene (Uniprot):RPS8
Chain IDs:BA (auth: K2)
Chain Length:208
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L13
Gene (Uniprot):RPL13
Chain IDs:CA (auth: L1)
Chain Length:211
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):RPS9
Chain IDs:DA (auth: L2)
Chain Length:194
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL14
Chain IDs:EA (auth: M1)
Chain Length:137
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):RPS19
Chain IDs:FA (auth: M2)
Chain Length:146
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L15
Gene (Uniprot):RPL15
Chain IDs:GA (auth: N1)
Chain Length:204
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:HA (auth: N2)
Chain Length:73
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L36a
Gene (Uniprot):RPL36A
Chain IDs:IA (auth: O1)
Chain Length:106
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S4
Gene (Uniprot):RPS4X
Chain IDs:JA (auth: O2)
Chain Length:263
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL17
Chain IDs:KA (auth: P1)
Chain Length:184
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):RPS18
Chain IDs:LA (auth: P2)
Chain Length:152
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L18
Gene (Uniprot):RPL18
Chain IDs:MA (auth: Q1)
Chain Length:188
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L19
Gene (Uniprot):RPL19
Chain IDs:NA (auth: R1)
Chain Length:196
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L18a
Gene (Uniprot):RPL18A
Chain IDs:OA (auth: S1)
Chain Length:176
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):RPS16
Chain IDs:PA (auth: S2)
Chain Length:146
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL21
Chain IDs:QA (auth: T1)
Chain Length:160
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S25
Gene (Uniprot):RPS25
Chain IDs:RA (auth: T2)
Chain Length:123
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):G4P62_014891
Chain IDs:SA (auth: U1)
Chain Length:129
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S7
Gene (Uniprot):RPS7
Chain IDs:TA (auth: U2)
Chain Length:194
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL23
Chain IDs:UA (auth: V1)
Chain Length:140
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl24
Chain IDs:VA (auth: W1)
Chain Length:157
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S6
Gene (Uniprot):RPS6
Chain IDs:WA (auth: W2)
Chain Length:249
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl23a
Chain IDs:XA (auth: X1)
Chain Length:155
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L26
Gene (Uniprot):RPL26
Chain IDs:YA (auth: Y1)
Chain Length:145
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):RPS11
Chain IDs:ZA (auth: Y2)
Chain Length:161
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L27
Gene (Uniprot):RPL27
Chain IDs:AB (auth: Z1)
Chain Length:136
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL8
Chain IDs:BB (auth: a1)
Chain Length:257
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L29
Gene (Uniprot):RPL29
Chain IDs:CB (auth: b1)
Chain Length:64
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):RPS28
Chain IDs:DB (auth: d2)
Chain Length:69
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL34
Chain IDs:EB (auth: e1)
Chain Length:117
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL35A
Chain IDs:FB (auth: f1)
Chain Length:110
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl37a
Chain IDs:GB (auth: g1)
Chain Length:92
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):RPSA
Chain IDs:HB (auth: g2)
Chain Length:313
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL5
Chain IDs:IB (auth: h1)
Chain Length:297
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polyribonucleotide
Molecule:5S rRNA
Chain IDs:JB (auth: i1)
Chain Length:120
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):RPS17
Chain IDs:KB (auth: i2)
Chain Length:134
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polyribonucleotide
Molecule:5.8S rRNA
Chain IDs:LB (auth: j1)
Chain Length:161
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL9
Chain IDs:MB (auth: k1)
Chain Length:192
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):GNB2L1
Chain IDs:YB (auth: k2)
Chain Length:317
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL6
Chain IDs:NB (auth: l1)
Chain Length:259
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L7a
Gene (Uniprot):RPL7A
Chain IDs:OB (auth: m1)
Chain Length:266
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S24
Gene (Uniprot):RPS24
Chain IDs:PB (auth: m2)
Chain Length:132
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL27A
Chain IDs:QB (auth: n1)
Chain Length:148
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):RPS20
Chain IDs:RB (auth: q2)
Chain Length:119
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):RPS15A
Chain IDs:SB (auth: r2)
Chain Length:130
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):PPT2
Chain IDs:TB (auth: u2)
Chain Length:203
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:DNA-(apurinic or apyrimidinic
Gene (Uniprot):RPS3
Chain IDs:UB (auth: w2)
Chain Length:247
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:FAU ubiquitin like and riboso
Gene (Uniprot):FAUA
Chain IDs:VB (auth: x2)
Chain Length:133
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rps23
Chain IDs:WB (auth: y2)
Chain Length:143
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S10
Gene (Uniprot):RPS10
Chain IDs:XB (auth: z2)
Chain Length:166
Number of Molecules:1
Biological Source:Nothobranchius furzeri
Primary Citation
Ribosome remodels in age-dependent manner
To Be Published ? ? ? (?)
Primary Citation of related structures
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