9W6F image
Deposition Date 2025-08-04
Release Date 2026-08-12
Last Version Date 2026-08-12
Entry Detail
PDB ID:
9W6F
Keywords:
GENE REGULATION/DNA
Title:
Cryo-EM structure of a stacked human nucleosome core particle trimer assembled with DNA truncated at SHL-4.5
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Escherichia coli (Taxon ID: 562)
Expression System(s):
Escherichia coli
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.56 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9W6F validation report missing
Macromolecular Entities
Structures with similar UniProt ID
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H3.1
Gene (Uniprot):H3C1, H3C2, H3C3, H3C4, H3C6, H3C7, H3C8, H3C10, H3C11, H3C12
Chain IDs:A, E, K, O, U, Y
Chain Length:135
Number of Molecules:6
Biological Source:Homo sapiens
UniProt ID:P68431 Pfam ID:PF00125
Structures with similar UniProt ID
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H4
Gene (Uniprot):H4C1, H4C2, H4C3, H4C4, H4C5, H4C6, H4C8, H4C9, H4C11, H4C12, H4C13, H4C14, H4C15, H4C16
Chain IDs:B, F, L, P, V, Z
Chain Length:102
Number of Molecules:6
Biological Source:Homo sapiens
UniProt ID:P62805 Pfam ID:PF15511
Structures with similar UniProt ID
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2A type 1-D
Gene (Uniprot):H2AC7
Chain IDs:C, G, M, Q, W, AA (auth: a)
Chain Length:129
Number of Molecules:6
Biological Source:Homo sapiens
UniProt ID:P20671 Pfam ID:PF00125, PF16211
Structures with similar UniProt ID
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2B type 2-E
Gene (Uniprot):H2BC21
Chain IDs:D, H, N, R, X, BA (auth: b)
Chain Length:125
Number of Molecules:6
Biological Source:Homo sapiens
UniProt ID:Q16778 Pfam ID:PF00125
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (119-MER)
Chain IDs:I, S, CA (auth: c)
Chain Length:119
Number of Molecules:3
Biological Source:Escherichia coli
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (119-MER)
Chain IDs:J, T, DA (auth: d)
Chain Length:119
Number of Molecules:3
Biological Source:Escherichia coli
Ligand Molecules
NA
Primary Citation
Structural basis for nucleosome stacking diversity mediated by solvent-exposed histone interfaces
To Be Published ? ? ? (?)
Primary Citation of related structures
9W6F
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