9VZQ image
Deposition Date 2025-07-23
Release Date 2026-06-03
Last Version Date 2026-06-03
Entry Detail
PDB ID:
9VZQ
Keywords:
Title:
Crystal structure of RORgamma in complex with novel inverse agonist
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.18 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Nuclear receptor ROR-gamma
Gene (Uniprot):RORC
Chain IDs:A
Chain Length:246
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Nuclear receptor coactivator
Gene (Uniprot):NCOA1
Chain IDs:B
Chain Length:13
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural basis for diosgenin as an inverse agonist of retinoic acid receptor-related orphan receptor gamma.
Sci Rep 16 4765 4765 (2026)
PMID: 41495387 DOI: 10.1038/s41598-026-35006-6

Abstact

Retinoic acid receptor-related orphan receptor gamma (RORgamma) is a member of the nuclear receptor superfamily involved in many physiological activities such as metabolic and autoimmune diseases, and therefore a potential therapeutic drug target. Here we report that the steroidal sapogenin, diosgenin, a novel ligand for RORgamma, inhibits the transcriptional activity of the RORgamma with distinctive properties in coregulator recruitment. Biochemical and cell-based studies indicated that diosgenin functions as a selective RORgamma inverse agonist by inducing both coactivator and corepressor binding to RORgamma, thereby uncovering a molecular mechanism for the actions of this natural compound. Further, the crystal structure of diosgenin complexed with the ligand-binding domain of RORgamma reveals a unique binding mode including the active conformation of AF-2 helix and the conformational shift of Helix 11. Structural and functional studies suggest the plasticity of RORgamma pockets in recognizing ligands and the vital roles of the backbone of diosgenin in recognizing RORgamma. Our results provide a unique inverse agonist template of RORgamma with high selectivity and efficacy, which contributes to further drug design and optimization targeting RORgamma.

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Primary Citation of related structures
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