9VV1 image
Deposition Date 2025-07-14
Release Date 2026-05-27
Last Version Date 2026-05-27
Entry Detail
PDB ID:
9VV1
Title:
Crystal structure of EGFR kinase (C797S) in complex with LN-B72
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.95 Å
R-Value Free:
0.28
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
I 2 3
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Epidermal growth factor recep
Gene (Uniprot):EGFR
Mutagens:C797S
Chain IDs:A
Chain Length:331
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Design, synthesis and biological evaluation of 2,4,5-trisubstituted 7H-Pyrrolo[2,3-d]pyrimidine derivatives as potent EGFR tyrosine kinase inhibitors against the C797S acquired resistance mutation.
Bioorg.Med.Chem. 139 118679 118679 (2026)
PMID: 42070540 DOI: 10.1016/j.bmc.2026.118679

Abstact

The C797S mutation in the epidermal growth factor receptor (EGFR) presents a significant challenge in treating non-small cell lung cancer (NSCLC), as it confers resistance to osimertinib. To tackle this issue, we designed and synthesized novel 7H-pyrrolo[2,3-d]pyrimidine derivatives that bind to the EGFR kinase domain in the presence of the C797S mutation. The representative compound cis-32 (LN-B72) not only showed remarkable kinase inhibitory activity against EGFR(Del19/T790M/C797S) and EGFR(L858R/T790M/C797S) mutants, with IC(50) values of 8.7 nM and 7.9 nM, respectively, but also displayed potent antiproliferative activity, achieving IC(50) values of 0.046 muM and 0.060 muM in corresponding mutant cell models. Furthermore, LN-B72 exhibited broad-spectrum inhibitory activity against EGFR mutants, including those harboring Exon 20 insertion mutations. Mechanistic studies indicated that LN-B72 disrupted the EGFR signaling pathway by preventing the phosphorylation of key downstream proteins. In vivo antitumor activity studies demonstrated that LN-B72 significantly inhibited tumor growth. This work establishes a promising foundation for developing novel therapeutic strategies targeting NSCLC patients with the C797S mutation.

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Primary Citation of related structures
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