9VT0 image
Deposition Date 2025-07-09
Release Date 2026-06-17
Last Version Date 2026-06-17
Entry Detail
PDB ID:
9VT0
Keywords:
Title:
Crystal structure of STING CTD complex with small molecular inhibitor DDO-88101
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.29
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Stimulator of interferon gene
Gene (Uniprot):STING1
Chain IDs:A
Chain Length:271
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Rational design of carbazole-based STING inhibitors for treating cGAS-STING pathway-driven inflammatory disorders.
Nat Commun ? ? ? (2026)
PMID: 42230579 DOI: 10.1038/s41467-026-73774-x

Abstact

Stimulator of Interferon Genes (STING) is a pivotal adaptor protein in the innate immune pathway, and its aberrant activation is closely associated with the pathogenesis of autoimmune diseases. Although it has emerged as an attractive therapeutic target for inflammatory disorders, current STING inhibitors still face challenges including off-target toxicity and limited understanding of binding mechanism. Herein, through a Target & Cell-based cascade screening and rational design, DDO-88109 with a carbazole scaffold is identified as a STING inhibitor, with IC(50) values of 1.76 muM and 1.85 muM in THP1-Dual and RAW-Lucia ISG cells, respectively. Moreover, DDO-88109 shows broad affinity for hSTING isoforms (WT, HAQ, and H232) and suppresses the activation of the cGAS-STING signaling pathway with favorable selectivity. Structurally, DDO-88109 occupies the CDN-binding pocket of STING in a 2:1 stoichiometry determined by co-crystal structure study. In TREX1 deficiency driven autoinflammation and cisplatin-induced AKI male mice models, treatment with DDO-88109 (15 mg/kg) significantly reduces the secretion of inflammatory factors and ameliorates tissue inflammation. Collectively, the discovery of DDO-88109 establishes a paradigm for structure-based rational drug development of STING inhibitors to provide potential small-molecule therapeutics against cGAS-STING signaling driven human autoimmune diseases.

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Primary Citation of related structures
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