ISDA: 9VPB

Deposition Date 2025-07-03

Release Date 2026-07-01

Last Version Date 2026-07-15

Entry Detail

PDB ID:

9VPB

Keywords:

MEMBRANE PROTEIN

Title:

Cryo-EM structure of the IF1 bound bovine F-ATP synthase planar dimer

Biological Source:

Source Organism(s):

Bos taurus (Taxon ID: 9913)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

5.00 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Polymer Type:polypeptide(L)
Molecule:ATP synthase F(0) complex sub
Chain IDs:A (auth: 8), C (auth: A8)
Chain Length:66
Number of Molecules:2
Biological Source:Bos taurus

Polymer Type:polypeptide(L)
Molecule:ATP synthase subunit alpha
Chain IDs:B (auth: A), D (auth: AA), E (auth: AB), F (auth: AC), DA (auth: B), EA (auth: C)
Chain Length:553
Number of Molecules:6
Biological Source:Bos taurus

Polymer Type:polypeptide(L)
Molecule:ATP synthase F(1) complex cat
Chain IDs:G (auth: AD), H (auth: AE), I (auth: AF), FA (auth: D), GA (auth: E), HA (auth: F)
Chain Length:528
Number of Molecules:6
Biological Source:Bos taurus

Polymer Type:polypeptide(L)
Molecule:ATP synthase F(1) complex sub
Chain IDs:J (auth: AG), IA (auth: G)
Chain Length:298
Number of Molecules:2
Biological Source:Bos taurus

Polymer Type:polypeptide(L)
Molecule:ATP synthase F(1) complex sub
Chain IDs:K (auth: AH), JA (auth: H)
Chain Length:108
Number of Molecules:2
Biological Source:Bos taurus

Polymer Type:polypeptide(L)
Molecule:ATP synthase F(1) complex sub
Chain IDs:L (auth: AI), KA (auth: I)
Chain Length:51
Number of Molecules:2
Biological Source:Bos taurus

Polymer Type:polypeptide(L)
Molecule:ATPase inhibitor, mitochondri
Chain IDs:M (auth: AJ), LA (auth: J)
Chain Length:109
Number of Molecules:2
Biological Source:Bos taurus

Polymer Type:polypeptide(L)
Molecule:ATP synthase F(0) complex sub
Chain IDs:N (auth: AK), O (auth: AL), P (auth: AM), Q (auth: AN), R (auth: AO), S (auth: AP), T (auth: AQ), U (auth: AR), MA (auth: K), NA (auth: L), OA (auth: M), PA (auth: N), QA (auth: O), RA (auth: P), SA (auth: Q), TA (auth: R)
Chain Length:143
Number of Molecules:16
Biological Source:Bos taurus

Polymer Type:polypeptide(L)
Molecule:ATP synthase peripheral stalk
Chain IDs:V (auth: AS), UA (auth: S)
Chain Length:213
Number of Molecules:2
Biological Source:Bos taurus

Polymer Type:polypeptide(L)
Molecule:ATP synthase F(0) complex sub
Chain IDs:W (auth: Aa), VA (auth: a)
Chain Length:553
Number of Molecules:2
Biological Source:Bos taurus

Polymer Type:polypeptide(L)
Molecule:ATP synthase peripheral stalk
Chain IDs:X (auth: Ab), WA (auth: b)
Chain Length:256
Number of Molecules:2
Biological Source:Bos taurus

Polymer Type:polypeptide(L)
Molecule:ATP synthase peripheral stalk
Chain IDs:Y (auth: Ad), XA (auth: d)
Chain Length:528
Number of Molecules:2
Biological Source:Bos taurus

Polymer Type:polypeptide(L)
Molecule:ATP synthase F(0) complex sub
Chain IDs:Z (auth: Ae), YA (auth: e)
Chain Length:528
Number of Molecules:2
Biological Source:Bos taurus

Polymer Type:polypeptide(L)
Molecule:ATP synthase F(0) complex sub
Chain IDs:AA (auth: Af), ZA (auth: f)
Chain Length:528
Number of Molecules:2
Biological Source:Bos taurus

Polymer Type:polypeptide(L)
Molecule:ATP synthase F(0) complex sub
Chain IDs:BA (auth: Ag), AB (auth: g)
Chain Length:298
Number of Molecules:2
Biological Source:Bos taurus

Polymer Type:polypeptide(L)
Molecule:ATP synthase peripheral stalk
Chain IDs:CA (auth: Ah), BB (auth: h)
Chain Length:108
Number of Molecules:2
Biological Source:Bos taurus

Ligand Molecules

Primary Citation

A planar dimer of bovine ATP synthase.

Jiko, C, Nakano, A, Teshirogi, Y, Yamashita, E, Kurisu, G, Standley, D, Terada, T, Mitsuoka, K, Yokoyama, K, Gerle, C.Show

Cell Death Differ. ? ? ? (2026)

PMID: 42399642 DOI: 10.1038/s41418-026-01797-4

Primary Citation of related structures

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