9VKM image
Deposition Date 2025-06-23
Release Date 2026-04-29
Last Version Date 2026-04-29
Entry Detail
PDB ID:
9VKM
Keywords:
Title:
Crystal structure of the Fe(II)/alpha-ketoglutarate dependent dioxygenase MicC
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 2 21 21
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Alpha-ketoglutarate-dependent
Chain IDs:A, B
Chain Length:295
Number of Molecules:2
Biological Source:Mucilaginibacter inviolabilis
Primary Citation
A ribosomally synthesized and posttranslationally modified peptide with ADP-ribosylation.
Proc.Natl.Acad.Sci.USA 123 e2527653123 e2527653123 (2026)
PMID: 41671188 DOI: 10.1073/pnas.2527653123

Abstact

Ribosomally synthesized and posttranslationally modified peptides (RiPPs) are a fertile ground for uncovering new enzymatic chemistry and structural complexity. Here, we describe minviopeptin, an unusual ADP-ribosylated triceptide accessed through heterologous expression of a cryptic biosynthetic gene cluster. Structural and functional analyses reveal a combination of crosslinking, ADP-ribosylation, and oxidative peptide cleavage, underscoring the capacity of RiPP pathways to generate densely functionalized molecular scaffolds. By revealing ADP-ribosylation as a previously unrecognized RiPP modification and exposing reactivity within radical SAM and nonheme iron enzymes, this work broadens the landscape of RiPP biosynthetic chemistries and offers opportunities for natural product diversification and peptide engineering.

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