9VFT image
Deposition Date 2025-06-11
Release Date 2025-11-19
Last Version Date 2026-06-10
Entry Detail
PDB ID:
9VFT
Keywords:
Title:
Structure of mature CVA6 virus complexed with 3H7 Fab
Biological Source:
Source Organism(s):
Mus musculus (Taxon ID: 10090)
Coxsackievirus A6 (Taxon ID: 86107)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.59 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Genome polyprotein
Chain IDs:F (auth: A)
Chain Length:305
Number of Molecules:1
Biological Source:Coxsackievirus A6
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Genome polyprotein
Chain IDs:D (auth: B)
Chain Length:256
Number of Molecules:1
Biological Source:Coxsackievirus A6
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Genome polyprotein
Chain IDs:E (auth: C)
Chain Length:240
Number of Molecules:1
Biological Source:Coxsackievirus A6
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Genome polyprotein
Chain IDs:C (auth: D)
Chain Length:69
Number of Molecules:1
Biological Source:Coxsackievirus A6
Protein Blast
Polymer Type:polypeptide(L)
Molecule:VL
Chain IDs:B (auth: E)
Chain Length:107
Number of Molecules:1
Biological Source:Mus musculus
Protein Blast
Polymer Type:polypeptide(L)
Molecule:VH
Chain IDs:A (auth: F)
Chain Length:124
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Molecular mechanisms of receptor recognition and antibody neutralization of coxsackievirus A6.
Nat Commun 17 934 934 (2025)
PMID: 41413343 DOI: 10.1038/s41467-025-67666-9

Abstact

Coxsackievirus A6 (CVA6), a major cause of hand, foot, and mouth disease, lacks approved vaccines or drugs. KRM1 is its only known receptor, but its precise role remains unclear. This study investigates CVA6's entry mechanism and antibody neutralization. Cryo-EM shows CVA6 clinical strain HeB primarily exists as mature virions. KRM1 binding within the canyon triggers conversion to uncoating intermediate, defining KRM1 as an uncoating receptor for CVA6. However, KRM1 knockout reduces CVA6 infectivity without affecting attachment. Conversely, disrupting heparan sulfate proteoglycan (HSPG) impairs both viral attachment and infectivity, and CVA6 virions bind heparin directly. These results support a two-receptor entry model for CVA6: HSPG mediates viral attachment, while KRM1 induces uncoating. Additionally, we develop two CVA6-specific protective antibodies (1F4 and 3H7), targeting a new antigenic site near the three-fold axis of the viral capsid. These antibodies sterically block KRM1 binding and function post-attachment, consistent with KRM1's role. The findings elucidate CVA6 entry and offer a basis for antibody interventions.

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Protein

Chemical

Disease

Primary Citation of related structures
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