9VDX image
Deposition Date 2025-06-09
Release Date 2026-03-25
Last Version Date 2026-04-22
Entry Detail
PDB ID:
9VDX
Title:
Serial synchrotron crystallography structure of a photosynthetic reaction center using a goniometer-compatible chip-based platform
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.25
R-Value Work:
0.21
Space Group:
P 43 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosynthetic reaction cente
Gene (Uniprot):pufC
Chain IDs:A (auth: C)
Chain Length:336
Number of Molecules:1
Biological Source:Blastochloris viridis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Reaction center protein H cha
Gene (Uniprot):puhA
Chain IDs:B (auth: H)
Chain Length:258
Number of Molecules:1
Biological Source:Blastochloris viridis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Reaction center protein L cha
Gene (Uniprot):pufL
Chain IDs:C (auth: L)
Chain Length:273
Number of Molecules:1
Biological Source:Blastochloris viridis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Reaction center protein M cha
Gene (Uniprot):pufM
Chain IDs:D (auth: M)
Chain Length:323
Number of Molecules:1
Biological Source:Blastochloris viridis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
FME B MET modified residue
Primary Citation
A user-friendly goniometer-compatible fixed-target platform for macromolecular crystallography at synchrotrons.
J Appl Crystallogr 59 303 315 (2026)
PMID: 41959872 DOI: 10.1107/S1600576725011513

Abstact

Fixed-target platforms provide convenient support for microcrystals during serial X-ray crystallography studies using synchrotron radiation. Here, we describe a simple user-friendly 3D-printed support where the crystals are sandwiched between two layers of thin X-ray-transparent membrane resulting in very low scattering background. The platform is compatible with magnetic mounting onto the standard goniometer of macromolecular crystallography beamlines. Our design utilizes a 96-well frame that facilitates hanging-drop experiments directly on the membrane using conventional crystallization plates, thereby eliminating multiple pipetting and crystal handling steps. Crystals can be enclosed in a sandwich and packed into 'cassettes', preventing the risk of the sample drying out during room-temperature transportation to synchrotron sources. The versatility of the platform is demonstrated by five structures solved using different crystallization and data-collection strategies. Lysozyme single-crystal rotational crystallography at room temperature is shown, as well as microcrystal serial data collection under cryogenic conditions. On-chip microcrystallization is illustrated by use of a photosynthetic reaction center as an example. Finally, serial crystallography data collection at room temperature from microcrystals of the membrane protein cytochrome c oxidase crystallized in lipidic cubic phase is presented.

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Primary Citation of related structures
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