9VDJ image
Deposition Date 2025-06-08
Release Date 2026-03-25
Last Version Date 2026-04-22
Entry Detail
PDB ID:
9VDJ
Title:
Serial synchrotron crystallography structure of a ba3-type cytochrome c oxidase using a goniometer-compatible chip-based platform
Biological Source:
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.26
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit
Gene (Uniprot):cbaA
Chain IDs:A
Chain Length:569
Number of Molecules:1
Biological Source:Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit
Gene (Uniprot):cbaB
Chain IDs:B
Chain Length:168
Number of Molecules:1
Biological Source:Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase polypept
Gene (Uniprot):cbaD
Chain IDs:C
Chain Length:34
Number of Molecules:1
Biological Source:Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Primary Citation
A user-friendly goniometer-compatible fixed-target platform for macromolecular crystallography at synchrotrons.
J Appl Crystallogr 59 303 315 (2026)
PMID: 41959872 DOI: 10.1107/S1600576725011513

Abstact

Fixed-target platforms provide convenient support for microcrystals during serial X-ray crystallography studies using synchrotron radiation. Here, we describe a simple user-friendly 3D-printed support where the crystals are sandwiched between two layers of thin X-ray-transparent membrane resulting in very low scattering background. The platform is compatible with magnetic mounting onto the standard goniometer of macromolecular crystallography beamlines. Our design utilizes a 96-well frame that facilitates hanging-drop experiments directly on the membrane using conventional crystallization plates, thereby eliminating multiple pipetting and crystal handling steps. Crystals can be enclosed in a sandwich and packed into 'cassettes', preventing the risk of the sample drying out during room-temperature transportation to synchrotron sources. The versatility of the platform is demonstrated by five structures solved using different crystallization and data-collection strategies. Lysozyme single-crystal rotational crystallography at room temperature is shown, as well as microcrystal serial data collection under cryogenic conditions. On-chip microcrystallization is illustrated by use of a photosynthetic reaction center as an example. Finally, serial crystallography data collection at room temperature from microcrystals of the membrane protein cytochrome c oxidase crystallized in lipidic cubic phase is presented.

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Primary Citation of related structures
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