9VAP image
Deposition Date 2025-06-03
Release Date 2026-04-08
Last Version Date 2026-04-22
Entry Detail
PDB ID:
9VAP
Keywords:
Title:
Cryo-EM structure of formate dehydrogenase from Shewanella oneidensis MR-1 (SoFdhAB)
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.75 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Formate dehydrogenase molybdo
Gene (Uniprot):fdhA
Chain IDs:A
Chain Length:949
Number of Molecules:1
Biological Source:Shewanella oneidensis MR-1
Protein Blast
Polymer Type:polypeptide(L)
Molecule:4Fe-4S dicluster domain-conta
Chain IDs:B
Chain Length:204
Number of Molecules:1
Biological Source:Shewanella oneidensis MR-1
Primary Citation
An interfacial-intramolecular electron highway for accelerated electrocatalytic CO 2 reduction by an O 2 -tolerant formate dehydrogenase.
Nat Commun 17 ? ? (2026)
PMID: 41775696 DOI: 10.1038/s41467-026-69827-w

Abstact

Bioelectrocatalytic CO(2) reduction offers a sustainable route for CO(2) bioconversion, yet remains limited by interfacial-intramolecular electron transfer and oxygen sensitivity. Here, we mine a formate dehydrogenase from Shewanella oneidensis MR-1 (SoFdhAB) featuring completely oxygen tolerant and direct-electron-transfer (DET) electrocatalytic performances. Cryo-electron microscopy (Cryo-EM) analysis reveals an intramolecular electron highway comprising five [4Fe-4S] clusters, a regional face-face contact facilitating interfacial ET, and a unique oxygen resistance mechanism different from inactivation-activation. By acquiring a beneficial variant SoFdhAB-Y94S, a direct bioelectrocatalytic CO(2) reduction system is constructed, accumulating 2.88 +/- 0.03 mmol formate in 64 hours with a steady rate of 45.3 +/- 0.5 mumol h(-1) cm(-2) and a Faradaic efficiency of 93.1 +/- 5.2%. The merits of oxygen tolerance and efficient (electro)catalytic property endow SoFdhAB a robust enzyme adopted in potential application scenarios, and the inherent DET capability may inspire the interfacial engineering of other oxidoreductases.

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Primary Citation of related structures
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