9V5P image
Deposition Date 2025-05-26
Release Date 2026-04-08
Last Version Date 2026-04-08
Entry Detail
PDB ID:
9V5P
Keywords:
Title:
Human DNMT1 (aa 698-1616) in complex with hemimethylated dsDNA and inhibitor DMT207
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.85 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA (cytosine-5)-methyltransf
Gene (Uniprot):DNMT1
Chain IDs:A
Chain Length:919
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*AP*CP*TP*TP*AP*(5C
Chain IDs:C (auth: B)
Chain Length:12
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*CP*CP*TP*TP*CP*CP*
Chain IDs:B (auth: E)
Chain Length:12
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Discovery of a Novel DNMT1 Inhibitor with Improved Efficacy in Treating beta-Thalassemia.
Adv Sci 13 e13469 e13469 (2026)
PMID: 41347631 DOI: 10.1002/advs.202513469

Abstact

beta-thalassemia is a recessively inherited blood disorder affecting millions worldwide. Pharmacological induction of fetal hemoglobin (HbF) is an effective therapeutic strategy, yet existing DNA methyltransferase (DNMT) inhibitors, although effective HbF inducers, currently are not approved for beta-thalassemia treatment. Here, we report that DMT207, a novel non-nucleoside DNMT1 inhibitor, robustly reactivates HbF in HUDEP-2 cells and adult primary erythroblasts with minimal toxicity. In a mouse model of beta-thalassemia, DMT207 effectively elevates the levels of mouse fetal- and embryonic-type hemoglobin, promotes the maturation of erythroid cells, and alleviates the splenomegaly. Further multi-omics analyses expose gamma-globin as one of the most sensitive genes with promoter demethylation and transcriptional activation following DMT207 treatment. Mechanistically, DMT207 traps DNMT1 into a catalytically inactive conformation and concurrently enhances its interaction with UHRF1, which partially contributes to DNMT1 degradation. These findings highlight the therapeutic potential of DMT207 for beta-thalassemia and support its further preclinical development.

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Chemical

Disease

Primary Citation of related structures
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