9V3S image
Deposition Date 2025-05-22
Release Date 2026-04-01
Last Version Date 2026-05-06
Entry Detail
PDB ID:
9V3S
Title:
Nav1.5 in complex with quinidine-azo
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Sodium channel protein type 5
Gene (Uniprot):SCN5A
Chain IDs:A
Chain Length:1618
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Optical control of the cardiac rhythm with photoswitchable Na V 1.5 channel blockers.
Nat Commun 17 ? ? (2026)
PMID: 41807386 DOI: 10.1038/s41467-026-70305-6

Abstact

Voltage-gated sodium channel Na(V)1.5 is essential for cardiac excitability, mediating the rapid depolarization phase of the cardiac action potential (AP) and ensuring proper electrical conduction in the heart. Dysfunction of Na(V)1.5 is implicated in life-threatening arrhythmias, making it a critical therapeutic target. Acting as a Na(V)1.5 open-state blocker, quinidine demonstrates efficacy in arrhythmia treatment, but its low specificity restricts its clinical application. Here, we report an optopharmacological strategy that enables a precise and optical control of Na(V)1.5 function by means of photoswitchable quinidine derivatives. Through systematic structural optimization, we identify azo-Q2a as a high-performance photoswitchable inhibitor, exhibiting low activity in the dark or under 480 nm light irradiation (trans isomer), while approximately 7-fold higher efficacy is observed under 365 nm light irradiation (cis isomer). Of note, azo-Q2a demonstrates exceptional selectivity for Na(V)1.5 over cardiac ion channels and other Na(V)1 subtypes, minimizing potential off-target effects. Furthermore, by solving the cryo-EM structure of the Na(V)1.5 in complex with the cis-active isomer azo-Q2a (3.0 A resolution), we reveal the essential binding site that is responsible for the optical control of Na(V)1.5. Finally, azo-Q2a also attenuates the heart rate of living zebrafish larvae with light, showing its potential in cardiac-related research and treatment. Our work not only establishes azo-Q2a as a robust photoswitchable inhibitor for Na(V)1.5 but also provides a structural blueprint for the rational design of next-generation optopharmacological antiarrhythmic agents.

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