9TMP image
Deposition Date 2025-12-15
Release Date 2026-03-25
Last Version Date 2026-04-15
Entry Detail
PDB ID:
9TMP
Keywords:
Title:
Crystal Structure of Native Cytochrome b562 in complex with the synthetic anti-BRIL antibody BAG2.
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.65 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 65
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Soluble cytochrome b562
Gene (Uniprot):cybC
Chain IDs:A
Chain Length:128
Number of Molecules:1
Biological Source:Escherichia coli BL21
Protein Blast
Polymer Type:polypeptide(L)
Molecule:anti-BRIL antibody - heavy ch
Chain IDs:B (auth: H)
Chain Length:229
Number of Molecules:1
Biological Source:synthetic construct
Protein Blast
Polymer Type:polypeptide(L)
Molecule:anti-BRIL antibody - light ch
Chain IDs:C (auth: L)
Chain Length:215
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Optimized bacterial expression of a synthetic BRIL antibody.
Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 82 143 149 (2026)
PMID: 41842660 DOI: 10.1107/S2053230X26001548

Abstact

The use of monoclonal fragments antigen binding (Fabs) is a prevalent methodology facilitating protein structure determination via both crystallography and cryo-EM. The development of a synthetic Fab against the BRIL domain improved the accessibility of this approach, providing a general fiducial applicable to any protein of interest via the simple curation of a BRIL fusion protein. Here, we document the generation of a T7 Express DeltacybC strain allowing contaminant-free bacterial expression of the synthetic anti-BRIL Fab BAG2. We also report the crystal structure of BAG2 in complex with native cytochrome b(562), a complex arising from expression in canonical Escherichia coli strains.

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Primary Citation of related structures
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