9TKM image
Deposition Date 2025-12-10
Release Date 2026-04-08
Last Version Date 2026-04-08
Entry Detail
PDB ID:
9TKM
Title:
CryoEM structure of coxsackievirus B1 virus-like particle with VP4 deletion
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Capsid protein VP1
Chain IDs:A (auth: 1)
Chain Length:278
Number of Molecules:1
Biological Source:Coxsackievirus B1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Capsid protein VP2
Chain IDs:B (auth: 2)
Chain Length:263
Number of Molecules:1
Biological Source:Coxsackievirus B1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Capsid protein VP3
Chain IDs:C (auth: 3)
Chain Length:238
Number of Molecules:1
Biological Source:Coxsackievirus B1
Ligand Molecules
Primary Citation
Coxsackie B1 virus-like particle that lacks VP4 protein demonstrates improved vaccine scalability, stability and immunogenicity.
J. Biomed. Sci. 33 ? ? (2026)
PMID: 41888844 DOI: 10.1186/s12929-026-01229-y

Abstact

BACKGROUND: Enteroviruses, including coxsackievirus B1 (CVB1), cause severe diseases such as myocarditis and meningitis, but vaccines are lacking for most enteroviruses. Conserved and immunodominant epitopes, such as VP4 region and VP1 N-terminus may limit vaccine efficacy by inducing non-neutralizing antibody responses. Virus-like particles (VLPs) mimic native viruses without genetic material and can be engineered to exclude epitopes. To address these challenges, we developed a CVB1-VLP lacking VP4. METHODS: Sequence conservation of CVB VP4 protein and the VP1 N-terminal PALXA region was assessed, and BALB/c mice were sequentially immunized with different formalin inactivated CVB vaccines. VLPDeltaVP4 was produced using baculovirus-insect cell expression system, was purified, and characterized by SDS-PAGE, transmission electron microscopy, dynamic light scattering, cryogenic electron microscopy, three-dimensional image reconstruction and atomic modelling. VLPDeltaVP4 stability was monitored over five years at 8 degrees C. Comprehensive preclinical experiments were conducted in mice with VLPDeltaVP4, VLPDeltapalxa and inactivated CVB1. Vaccine immunogenicity was evaluated by neutralization assay, ELISA, ELISpot, and in vitro infection assays. RESULTS: VP4- and PALXA-regions were conserved among CVB serotypes and sequential mouse vaccinations confirmed the induction of antibodies against these regions, that should be avoided in vaccination. VLPDeltaVP4 exhibited > 95% purity, expected morphology (~ 30 nm), exceptional stability at 8 degrees C for five years, and the atomic modelling to 2.7 A resolution showed that the particles were entirely in expanded form. Excluding VP4 from VLP improved production yield 3.5-fold, enhancing scalability of production. Immunological assays demonstrated that VLPDeltaVP4 induced slightly Th2-skewed response, but including adjuvant system 04 (AS04) in the vaccine induced balanced humoral and cellular immune response in mice. Sera from all vaccine groups modulated CVB1 infection, but IFN-alpha induction was lowest in VLP groups, suggesting reduced risk for antibody dependent enhancement of infection. VLPDeltaVP4 elicited significantly higher IFN-gamma responses compared to other vaccines, indicating robust cellular immune response. Antibody responses were comparable across adjuvanted groups, but inclusion of VP4 in the vaccine correlated with weaker systemic T-cell responses. CONCLUSIONS: VLPDeltaVP4 represents a promising next-generation CVB vaccine candidate with broad applicability against enteroviruses. Removal of VP4 may mitigate the risk for non-beneficial immune imprinting while enabling high purity, long-term stability, and improved manufacturing efficiency.

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Primary Citation of related structures
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