9TK3 image
Deposition Date 2025-12-08
Release Date 2026-05-20
Last Version Date 2026-05-20
Entry Detail
PDB ID:
9TK3
Keywords:
Title:
Room temperature structure of urocanate reductase in complex with imidazole propionate and sulfate
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.93 Å
R-Value Free:
0.17
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 31 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Urocanate reductase
Gene (Uniprot):urdA
Chain IDs:A
Chain Length:460
Number of Molecules:1
Biological Source:Shewanella oneidensis MR-1
Primary Citation
Structural insights into urocanate reductase using room-temperature X-ray crystallography.
Acta Crystallogr D Struct Biol ? ? ? (2026)
PMID: 42083916 DOI: 10.1107/S2059798326003360

Abstact

Urocanate reductase (UrdA) is a bacterial enzyme that converts urocanic acid to imidazole propionate. Its catalytic residue Arg411 undergoes a large conformational change in the substrate-bound versus product-bound states. In contrast to previously studied cryo-conditions, the room-temperature X-ray data of UrdA presented here show that the occupancy distribution of Arg411 is affected by crystal cryocooling. We further provide evidence that a phosphate ion stabilizes the substrate complex and can bias the conformation of Arg411. Both room-temperature and cryogenic X-ray datasets were essential to elucidate the dynamic nature of the UrdA active site, highlighting the importance of collecting data at both temperatures, as each may reveal distinct conformational states.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback