9THY image
Deposition Date 2025-12-04
Release Date 2026-05-27
Last Version Date 2026-05-27
Entry Detail
PDB ID:
9THY
Keywords:
Title:
ReAIV structure containing an acrylamide adduct at Cys183 and an orthoborate ester at Ser47
Biological Source:
Source Organism(s):
Rhizobium etli (Taxon ID: 29449)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.40 Å
R-Value Free:
0.18
R-Value Work:
0.13
R-Value Observed:
0.13
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:L-asparaginase II protein
Gene (Uniprot):RHE_CH01144
Chain IDs:A, B
Chain Length:341
Number of Molecules:2
Biological Source:Rhizobium etli
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SEE A SER modified residue
Primary Citation
Efficient acrylamide adduct formation suggests dual applications of ReAIV L-asparaginase.
Amino Acids ? ? ? (2026)
PMID: 42113412 DOI: 10.1007/s00726-026-03525-1

Abstact

Isothermal titration calorimetry (ITC) studies of the enzyme kinetics and substrate specificity of Rhizobium etli Class 3 L-asparaginases, ReAIV (constitutive) and ReAV (inducible), showed that despite highly conserved catalytic site, the two isoforms differ significantly in thermostability, zinc affinity, and biochemical properties. As part of a wider investigation of potential non-natural substrates, acrylamide was tested, revealing a pronounced heat effect with ReAIV but none with ReAV. Crystallographic analysis showed the formation of a Michael adduct between acrylamide and a surface-exposed cysteine 183 in ReAIV, while the catalytic activity toward L-asparagine hydrolysis remained unaffected. These findings highlight the unique and multimodal reactivity of ReAIV, suggesting its potential dual application in the food industry: in selective removal of L-asparagine and in covalent sequestration of acrylamide under mild conditions. The acrylamide modification improved crystal morphology of ReAIV, offering practical advantages for structural studies. Additionally, a covalent modification of the catalytic Ser47 residue was observed in the presented crystal structure. Based on B-factor analysis, literature data, and detection of borate contamination in the laboratory water, this modification was interpreted as an orthoborate ester.

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Primary Citation of related structures
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