9TD2 image
Deposition Date 2025-11-22
Release Date 2026-06-10
Last Version Date 2026-08-05
Entry Detail
PDB ID:
9TD2
Keywords:
Title:
Integrin AlphaIIbBeta3 bound to Fab of the anti-HPA-1a antibody 26.4
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.64 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Integrin alpha-IIb
Gene (Uniprot):ITGA2B
Chain IDs:A
Chain Length:993
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Integrin beta-3
Gene (Uniprot):ITGB3
Chain IDs:B
Chain Length:735
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Antibody 26.4 Fab heavy chain
Chain IDs:C (auth: H)
Chain Length:242
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Antibody 26.4 Fab light chain
Chain IDs:D (auth: L)
Chain Length:215
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
High-resolution cryo-EM structure of integrin alpha IIb beta 3 bound to disease-causing maternal HPA-1a antibody that blocks integrin activation.
Sci Adv 12 eaed9833 eaed9833 (2026)
PMID: 42467762 DOI: 10.1126/sciadv.aed9833

Abstact

Integrins promote immunity, embryonic development, wound healing, and hemostasis, and are activated by 'bent/closed' to 'extended/open' conformational changes. Integrin alphaIIbbeta3, being crucial for platelet activation and aggregation, is a therapeutic target for bleeding disorders and thrombosis. Human Platelet Antigen-1a (HPA-1a) on beta3 is recognized by pregnancy-associated maternal alloantibodies, potentially causing fetal/neonatal alloimmune thrombocytopenia (FNAIT) and even intracranial hemorrhage or perinatal death. We report the structure of an anti-HPA-1a antibody fragment (Fab 26.4) in complex with integrin alphaIIbbeta3 at high resolution by cryo-electron microscopy. Fab 26.4 binding locks alphaIIbbeta3 in the inactive, bent/closed conformation, is incompatible with integrin extension, and inhibits alphaIIbbeta3-dependent fibrinogen binding and platelet aggregation. Thus, anti-HPA-1a antibodies directly impair integrin activation by preventing required conformational changes. These insights will improve FNAIT diagnostics and treatment, and spark the development of novel allosteric inhibitors against beta3 integrins for future therapeutic applications.

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Protein

Chemical

Disease

Primary Citation of related structures
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