9TB0 image
Deposition Date 2025-11-19
Release Date 2026-08-12
Last Version Date 2026-09-30
Entry Detail
PDB ID:
9TB0
Keywords:
Title:
Complex structure of AMPylated EF-Tu-T62A bound to SoFic-H198A
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.76 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Protein adenylyltransferase S
Gene (Uniprot):fic
Mutagens:H198A
Chain IDs:A, B
Chain Length:392
Number of Molecules:2
Biological Source:Shewanella oneidensis MR-1
Polymer Type:polypeptide(L)
Molecule:Elongation factor Tu 1
Gene (Uniprot):tufA
Mutagens:T62A
Chain IDs:C, D
Chain Length:396
Number of Molecules:2
Biological Source:Escherichia coli BL21(DE3)
Primary Citation
The Shewanella oneidensis Fic enzyme SoFic targets the switch-I region of EF-Tu for AMPylation.
Febs Lett. ? ? ? (2026)
PMID: 42757569 DOI: 10.1002/1873-3468.70457

Abstact

Fic enzymes mediate diverse post-translational modifications, including adenosine monophosphate (AMP) transfer and removal, referred to as AMPylation and deAMPylation, respectively. We identified the prokaryotic translation elongation factor Tu (EF-Tu) as an AMPylation target of the Fic enzyme SoFic. SoFic can constitutively reverse EF-Tu modification via deAMPylation whereas AMPylation depends on SoFic homodimerization. The complex crystal structure between SoFic and EF-Tu confirms a conserved target binding mode across evolutionarily distant Fic enzymes. AMPylation disrupts EF-Tu's regulatory switch-I region, causing translational inhibition. SoFic furthermore binds to its promoter DNA in vitro, suggesting a dual function as transcriptional and translational regulator in bacterial cells. Together, our structural and biochemical data provide valuable insights into the functional and regulatory diversity of Fic enzymes.

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