ISDA: 9SY6

Deposition Date 2025-10-10

Release Date 2026-10-21

Last Version Date 2026-10-21

Entry Detail

PDB ID:

9SY6

Keywords:

RIBOSOME

Title:

Structural characterization of hibernating ribosomes in the Gram-negative pathogen Pseudomonas aeruginosa

Biological Source:

Source Organism(s):

Escherichia coli (Taxon ID: 562)
Pseudomonas aeruginosa PA14 (Taxon ID: 652611)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.60 Å

Aggregation State:

CELL

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmG
Chain IDs:A (auth: 0)
Chain Length:51
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A140SG33

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmH
Chain IDs:B (auth: 1)
Chain Length:44
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A087L9L7

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmI
Chain IDs:C (auth: 2)
Chain Length:64
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A069QC44

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmJ
Chain IDs:D (auth: 3)
Chain Length:38
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:E2RXU2

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmE
Chain IDs:E (auth: 4)
Chain Length:71
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A072ZJG4

Polymer Type:polyribonucleotide
Molecule:16S rRNA (1535-MER)
Chain IDs:F (auth: A)
Chain Length:1536
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsB
Chain IDs:G (auth: B)
Chain Length:246
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A072ZPV8

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsC
Chain IDs:H (auth: C)
Chain Length:228
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A140S919

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsD
Chain IDs:I (auth: D)
Chain Length:206
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A072ZDF7

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsE
Chain IDs:J (auth: E)
Chain Length:166
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A241XG65

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsF
Chain IDs:K (auth: F)
Chain Length:139
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A069Q263

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsG
Chain IDs:L (auth: G)
Chain Length:156
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A2V3F2U6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsH
Chain IDs:M (auth: H)
Chain Length:130
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:E2RXT9

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsI
Chain IDs:N (auth: I)
Chain Length:130
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A069PXX1

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsJ
Chain IDs:O (auth: J)
Chain Length:103
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:E2RXT0

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsK
Chain IDs:P (auth: K)
Chain Length:129
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:E2RXU4

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsL
Chain IDs:Q (auth: L)
Chain Length:123
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A071L394

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsM
Chain IDs:R (auth: M)
Chain Length:118
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:E2RXU3

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsN
Chain IDs:S (auth: N)
Chain Length:101
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:E2RXT8

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsO
Chain IDs:T (auth: O)
Chain Length:89
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A071L3R7

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsP
Chain IDs:U (auth: P)
Chain Length:83
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A0C6ET39

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsQ
Chain IDs:V (auth: Q)
Chain Length:88
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:E2RXT5

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsR
Chain IDs:W (auth: R)
Chain Length:76
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A2V3DLV3

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsS
Chain IDs:X (auth: S)
Chain Length:91
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:E2RXT2

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsT
Chain IDs:Y (auth: T)
Chain Length:91
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A072ZDZ9

Polymer Type:polyribonucleotide
Molecule:non-STOP mRNA
Chain IDs:Z (auth: W)
Chain Length:15
Number of Molecules:1
Biological Source:Escherichia coli

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosome hibernation promotin
Gene (Uniprot):raiA
Chain IDs:AA (auth: X)
Chain Length:102
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A071L218

Polymer Type:polyribonucleotide
Molecule:23S rRNA (2890-MER)
Chain IDs:BA (auth: a)
Chain Length:2891
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

Polymer Type:polyribonucleotide
Molecule:5S rRNA (117-MER)
Chain IDs:CA (auth: b)
Chain Length:120
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplB
Chain IDs:DA (auth: c)
Chain Length:273
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A241XHA2

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplC
Chain IDs:EA (auth: d)
Chain Length:211
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A072ZBZ2

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplD
Chain IDs:FA (auth: e)
Chain Length:200
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A241XH26

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplE
Chain IDs:GA (auth: f)
Chain Length:179
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A072ZMU2

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplF
Chain IDs:HA (auth: g)
Chain Length:177
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A2V3F3S9

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplI
Chain IDs:IA (auth: h)
Chain Length:148
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A072ZKF0

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplM
Chain IDs:JA (auth: i)
Chain Length:142
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A071L356

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplN
Chain IDs:KA (auth: j)
Chain Length:122
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:E2RXT6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplO
Chain IDs:LA (auth: k)
Chain Length:144
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A2V3D5Z8

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplP
Chain IDs:MA (auth: l)
Chain Length:137
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A069QEB6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplQ
Chain IDs:NA (auth: m)
Chain Length:129
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A072ZCA1

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplR
Chain IDs:OA (auth: n)
Chain Length:116
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:E2RXU0

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplS
Chain IDs:PA (auth: o)
Chain Length:116
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A263PZC6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplT
Chain IDs:QA (auth: p)
Chain Length:118
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A069QEE3

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplU
Chain IDs:RA (auth: q)
Chain Length:103
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A072ZDZ0

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplV
Chain IDs:SA (auth: r)
Chain Length:110
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:Q9HWE0

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplW
Chain IDs:TA (auth: s)
Chain Length:99
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:E2RXT1

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplX
Chain IDs:UA (auth: t)
Chain Length:104
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:E2RXT7

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplY
Chain IDs:VA (auth: u)
Chain Length:204
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A0C6EQQ8

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmA
Chain IDs:WA (auth: v)
Chain Length:85
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A071LFT4

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmB
Chain IDs:XA (auth: w)
Chain Length:78
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A072ZIQ9

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmC
Chain IDs:YA (auth: x)
Chain Length:63
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:E2RXT4

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmD
Chain IDs:ZA (auth: y)
Chain Length:58
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:E2RXU1

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmF
Chain IDs:AB (auth: z)
Chain Length:60
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PA14

UniProt ID:A0A069QB25

Modified Residue

Compound ID	Chain ID	Parent Comp ID	Details
2MG	F	G	modified residue
4D4	MA	ARG	modified residue
4OC	F	C	modified residue
5MC	F	C	modified residue
D2T	Q	ASP	modified residue
G7M	F	G	modified residue
MA6	F	A	modified residue
MEQ	EA	GLN	modified residue
MS6	MA	MET	modified residue
PSU	F	U	modified residue
UR3	F	U	modified residue