9SOQ image
Deposition Date 2025-09-15
Release Date 2025-09-24
Last Version Date 2026-04-15
Entry Detail
PDB ID:
9SOQ
Keywords:
Title:
Tissue inhibitor of Metalloproteinase 1 (TIMP-1)
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.26
R-Value Work:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Metalloproteinase inhibitor 1
Gene (Uniprot):TIMP1
Chain IDs:A, B
Chain Length:184
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
The human TIMP-1 unbound structure provides a platform for fragment screening.
Acta Crystallogr D Struct Biol 82 330 335 (2026)
PMID: 41834537 DOI: 10.1107/S2059798326001749

Abstact

Tissue inhibitor of metalloproteinases-1 (TIMP-1) is a critical regulator of extracellular matrix remodelling and an important mediator of remyelination in demyelinating disorders such as multiple sclerosis. In addition, TIMP-1 has emerged as a promising therapeutic target in cancer due to its interaction with CD63, which promotes tumorigenic signalling and carcinogenesis. Although several structures of TIMP-1 bound to matrix metalloproteinases have been reported, no unbound structure with all druggable sites available has previously been reported. Here, we present the first unbound crystal structure of human TIMP-1, resolved at 1.95 A resolution. Comparison with the MMP-bound complex reveals localized conformational changes and altered intramolecular hydrogen bonding in the unbound structure, indicating increased structural plasticity in the absence of the protease. Crystals were obtained in multiple conditions, but only two diffracted to high resolution. Although optimization and seeding did not significantly improve the morphology, the additive screen enhanced both the morphology and reproducibility and provided intrinsic cryoprotection. The resulting crystal form proved compatible with soaking-based screening campaigns, providing a robust structural basis for the discovery of TIMP-1 ligands with clinical potential.

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Primary Citation of related structures
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