9SFP image
Deposition Date 2025-08-20
Release Date 2026-03-18
Last Version Date 2026-05-06
Entry Detail
PDB ID:
9SFP
Title:
Native cytoplasmic lattices from mouse oocytes
Biological Source:
Source Organism(s):
Mus musculus (Taxon ID: 10090)
Method Details:
Experimental Method:
Resolution:
4.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:F-box and WD-40 domain protei
Gene (Uniprot):Fbxw20
Chain IDs:A, B
Chain Length:468
Number of Molecules:2
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:KH domain-containing protein
Gene (Uniprot):Khdc3
Chain IDs:C
Chain Length:440
Number of Molecules:1
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NLR family, pyrin domain cont
Gene (Uniprot):Nlrp4f
Chain IDs:D, E (auth: F)
Chain Length:937
Number of Molecules:2
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NACHT, LRR and PYD domains-co
Gene (Uniprot):Nlrp5
Chain IDs:F (auth: H), G (auth: I)
Chain Length:1163
Number of Molecules:2
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NACHT, LRR and PYD domains-co
Gene (Uniprot):Nlrp14
Chain IDs:H (auth: J)
Chain Length:993
Number of Molecules:1
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Oocyte-expressed protein homo
Gene (Uniprot):Ooep
Chain IDs:I (auth: K), J (auth: L)
Chain Length:164
Number of Molecules:2
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Inactive protein-arginine dei
Gene (Uniprot):Padi6
Chain IDs:K (auth: M), L (auth: N), M (auth: O), N (auth: P), O (auth: Q), P (auth: R), Q (auth: S), R (auth: T), S (auth: U), T (auth: V)
Chain Length:682
Number of Molecules:10
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transducin-like enhancer prot
Gene (Uniprot):Tle6
Chain IDs:U (auth: W), V (auth: Y)
Chain Length:581
Number of Molecules:2
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tubulin alpha-1A chain
Gene (Uniprot):Tuba1a
Chain IDs:W (auth: a)
Chain Length:468
Number of Molecules:1
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tubulin beta-4B chain
Gene (Uniprot):Tubb4b
Chain IDs:X (auth: b)
Chain Length:445
Number of Molecules:1
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquitin-conjugating enzyme
Gene (Uniprot):Ube2d3
Chain IDs:Y (auth: c)
Chain Length:440
Number of Molecules:1
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase U
Gene (Uniprot):Uhrf1
Chain IDs:Z (auth: d)
Chain Length:937
Number of Molecules:1
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Zinc finger BED domain-contai
Gene (Uniprot):Zbed3
Chain IDs:AA (auth: e)
Chain Length:228
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Cytoplasmic lattices are megadalton storage complexes in mammalian oocytes.
Nature ? ? ? (2026)
PMID: 41986725 DOI: 10.1038/s41586-026-10513-8

Abstact

Mammalian oocytes store proteins for embryonic development on abundant structures known as cytoplasmic lattices (CPLs)(1); however, the mechanisms by which they achieve this are unclear, largely because the molecular composition of the lattices themselves is unknown. Here, we use cryo-electron microscopy and artificial intelligence-based modeling to elucidate the molecular architecture and protein composition of native CPLs from mouse oocytes. We find that CPLs are formed by at least 13 different proteins assembling into a megadalton-scale complex, including multiple copies of maternal effect factors such as PADI6 and the subcortical maternal complex (SCMC). We show that proteins essential for early embryonic development are in fact structural components of the CPLs, including the cytoskeletal proteins alpha- and beta-tubulin, which are incorporated into CPLs as unpolymerized dimers; and an array of ubiquitination factors such as the epigenetic regulator and E3 ligase UHRF1, ubiquitin-conjugating E2 enzymes, and ubiquitin ligase substrate adaptors. This represents an elegant molecular mechanism by which oocytes stockpile vital proteins through direct incorporation into highly stable supramolecular assemblies. Our structures solve the decades-long mystery of the CPLs, thereby providing a structural framework for understanding how disrupting stored maternal factors leads to infertility and developmental defects.

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