9SDA image
Deposition Date 2025-08-13
Release Date 2026-05-06
Last Version Date 2026-05-06
Entry Detail
PDB ID:
9SDA
Keywords:
Title:
Cryo-EM structure of the 70S ribosome from Francisella tularensis bound to a hibernation-promoting factor
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
2.39 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmF
Chain IDs:AA (auth: 0)
Chain Length:60
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmG
Chain IDs:BA (auth: 1)
Chain Length:51
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmH
Chain IDs:CA (auth: 2)
Chain Length:44
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmI
Chain IDs:DA (auth: 3)
Chain Length:65
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmJ
Chain IDs:EA (auth: 4)
Chain Length:37
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Ribosome hibernation promotin
Gene (Uniprot):raiA
Chain IDs:AB (auth: 9)
Chain Length:98
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polyribonucleotide
Molecule:Chains: A
Chain IDs:A
Chain Length:2886
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polyribonucleotide
Molecule:Chains: B
Chain IDs:B
Chain Length:115
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplB
Chain IDs:C
Chain Length:274
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplC
Chain IDs:D
Chain Length:210
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplD
Chain IDs:E
Chain Length:207
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplE
Chain IDs:F
Chain Length:179
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplF
Chain IDs:G
Chain Length:178
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplI
Chain IDs:H
Chain Length:151
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplM
Chain IDs:I
Chain Length:142
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplN
Chain IDs:J
Chain Length:122
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplO
Chain IDs:K
Chain Length:143
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplP
Chain IDs:L
Chain Length:137
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplQ
Chain IDs:M
Chain Length:145
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplR
Chain IDs:N
Chain Length:117
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplS
Chain IDs:O
Chain Length:115
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplT
Chain IDs:P
Chain Length:118
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplU
Chain IDs:Q
Chain Length:104
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplV
Chain IDs:R
Chain Length:111
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplW
Chain IDs:S
Chain Length:99
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplX
Chain IDs:T
Chain Length:105
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplY
Chain IDs:U
Chain Length:96
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmA
Chain IDs:V
Chain Length:84
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmB
Chain IDs:W
Chain Length:78
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmC
Chain IDs:X
Chain Length:66
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmD
Chain IDs:Y
Chain Length:61
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmE
Chain IDs:Z
Chain Length:72
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polyribonucleotide
Molecule:Chains: a
Chain IDs:FA (auth: a)
Chain Length:1528
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsB
Chain IDs:GA (auth: b)
Chain Length:222
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsC
Chain IDs:HA (auth: c)
Chain Length:209
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsD
Chain IDs:IA (auth: d)
Chain Length:205
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsE
Chain IDs:JA (auth: e)
Chain Length:166
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsF
Chain IDs:KA (auth: f)
Chain Length:111
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsG
Chain IDs:LA (auth: g)
Chain Length:157
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsH
Chain IDs:MA (auth: h)
Chain Length:132
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsI
Chain IDs:NA (auth: i)
Chain Length:129
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsJ
Chain IDs:OA (auth: j)
Chain Length:105
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsK
Chain IDs:PA (auth: k)
Chain Length:129
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsL
Chain IDs:QA (auth: l)
Chain Length:124
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsM
Chain IDs:RA (auth: m)
Chain Length:118
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsN
Chain IDs:SA (auth: n)
Chain Length:101
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsO
Chain IDs:TA (auth: o)
Chain Length:88
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsP
Chain IDs:UA (auth: p)
Chain Length:82
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsQ
Chain IDs:VA (auth: q)
Chain Length:83
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsR
Chain IDs:WA (auth: r)
Chain Length:72
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsS
Chain IDs:XA (auth: s)
Chain Length:92
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsT
Chain IDs:YA (auth: t)
Chain Length:90
Number of Molecules:1
Biological Source:Francisella tularensis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsU2
Chain IDs:ZA (auth: u)
Chain Length:65
Number of Molecules:1
Biological Source:Francisella tularensis
Primary Citation
Structure of the hibernating Francisella tularensis ribosome and mechanistic insights into its inhibition by antibiotics.
Nucleic Acids Res. 54 ? ? (2026)
PMID: 42049235 DOI: 10.1093/nar/gkag340

Abstact

Francisella tularensis is the causative agent of tularemia, a zoonotic disease named after the Tulare County, California. Symptoms include sudden fever, chills, fatigue, and swollen lymph nodes, among others, and without treatment it is very serious or even fatal. In addition, F. tularensis is considered a potential bioterrorism threat due to its high infectivity and lethality. Ribosomes are key targets for many classes of antibiotics. In this study, we examined the F. tularensis ribosome and determined its structure at 2.5A resolution using cryo-electron microscopy. Notably, we observed the stress-induced ribosome-associated inhibitor A (RaiA) protein bound to the ribosome. RaiA functions as a molecular hibernation factor, inhibiting bacterial translation in response to stress or nutrient deprivation. This mechanism parallels that described in the model organism Escherichia coli and in several pathogenic bacteria, such as Staphylococcus aureus. Furthermore, we solved structures of the antibiotics chloramphenicol and gentamicin bound to the F. tularensis ribosome. Collectively, these results provide structural insights that highlight previously unexplored opportunities for therapeutic intervention.

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Primary Citation of related structures
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