9RYE image
Deposition Date 2025-07-15
Release Date 2026-04-08
Last Version Date 2026-04-15
Entry Detail
PDB ID:
9RYE
Title:
Heterodimeric ABC exporter TmrAB (EQ mutant) in ATP-bound outward-facing occluded conformation in the absence of Mg2+
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.02 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Multidrug resistance ABC tran
Gene (Uniprot):TT_C0976
Mutagens:E523Q
Chain IDs:A
Chain Length:623
Number of Molecules:1
Biological Source:Thermus thermophilus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Multidrug resistance ABC tran
Gene (Uniprot):TT_C0977
Chain IDs:B
Chain Length:578
Number of Molecules:1
Biological Source:Thermus thermophilus
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nanobody Nb9F10
Chain IDs:C
Chain Length:136
Number of Molecules:1
Biological Source:Vicugna pacos
Ligand Molecules
Primary Citation
Single-molecule dynamics reveal ATP binding alone powers substrate translocation by an ABC transporter.
Nat Commun 17 ? ? (2026)
PMID: 41916987 DOI: 10.1038/s41467-026-70021-1

Abstact

ATP-binding cassette (ABC) transporters are molecular machines involved in diverse physiological processes, including antigen processing by TAP, a key component of adaptive immunity. TAP and its bacterial homolog TmrAB use ATP to translocate peptides across membranes, yet the precise mechanism linking ATP binding to substrate movement remains unclear. Here, we employ a single-molecule FRET sensor to visualize single translocation events by individual ABC transporters and thereby overcome the limitations of ensemble averaging. This approach reveals that substrate transport is driven by a conformational switch from the inward- to the outward-facing state. Using a slow-turnover TmrAB variant, we demonstrate that ATP binding alone, even in the absence of Mg(2+), is sufficient to drive a single round of peptide translocation. Cryo-EM structures of wild-type and slow-turnover TmrAB show that ATP binding induces the outward-facing conformation even without Mg(2+). In wild-type TmrAB, this conformational transition supports a single translocation event, whereas Mg(2+)-dependent ATP hydrolysis is required to reset the transporter. These findings establish a direct mechanistic link between ATP binding and substrate translocation at single-molecule resolution and provide insight into the catalytic cycle of ABC transporters.

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Primary Citation of related structures
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