9RDC image
Deposition Date 2025-06-02
Release Date 2025-07-16
Last Version Date 2026-06-17
Entry Detail
PDB ID:
9RDC
Keywords:
Title:
Crystal structure of Phytophthora infestans effector AVRcap1b in complex with the ENTH domain of Nicotiana benthamiana NbTOL9a protein
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
4.10 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.25
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RxLR effector protein PITG_16
Gene (Uniprot):PITG_16705
Chain IDs:A, B
Chain Length:619
Number of Molecules:2
Biological Source:Phytophthora infestans
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Target of myb protein 1
Chain IDs:C, D
Chain Length:150
Number of Molecules:2
Biological Source:Nicotiana benthamiana
Ligand Molecules
Primary Citation
A potato late blight pathogen effector interacts with ENTH-domain protein TOL9a and an activated helper NLR to suppress immunity.
Sci Adv 12 eaea4500 eaea4500 (2026)
PMID: 42247512 DOI: 10.1126/sciadv.aea4500

Abstact

Pathogens counteract central nodes of NLR immune receptor networks to suppress immunity. However, the mechanisms by which pathogens hijack helper NLR pathways are poorly understood. We show that an effector from the late blight pathogen Phytophthora infestans interacts with the host protein NbTOL9a and a helper NLR to suppress immunity. We solved the crystal structure of the RXLR-LWY effector AVRcap1b in complex with the ENTH domain of NbTOL9a. The structure revealed that, unlike other RXLR-LWY effectors, AVRcap1b has a previously unidentified L-shaped fold that defines a distinct structural family of effectors in the genus Phytophthora. We defined the AVRcap1b/NbTOL9a binding interface and designed effector mutants that do not bind NbTOL9a, impairing immune suppression. This suggests that ENTH binding is required for full virulence activity. Last, we show that AVRcap1b associates specifically with activated NbNRC2 independently of NbTOL9a binding. We propose a model in which the effector interconnects NbNRC2 with the NbTOL9a pathway. Our results illustrate a previously uncharacterized pathogen mechanism to hijack NLR pathways and suppress immunity.

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Primary Citation of related structures
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