9R78 image
Deposition Date 2025-05-14
Release Date 2025-12-17
Last Version Date 2026-05-13
Entry Detail
PDB ID:
9R78
Keywords:
Title:
Human Adenovirus D 10 Capsid Structure
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pre-protein VI
Gene (Uniprot):L3
Chain IDs:A (auth: 1), B (auth: 2), C (auth: 3), D (auth: 4), E (auth: 5), F (auth: 6), G (auth: 7), H (auth: 8)
Chain Length:234
Number of Molecules:8
Biological Source:Human adenovirus D10
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hexon protein
Gene (Uniprot):L3
Chain IDs:I (auth: A), J (auth: B), K (auth: C), L (auth: D), M (auth: E), N (auth: F), O (auth: G), P (auth: H), Q (auth: I), R (auth: J), S (auth: K), T (auth: L)
Chain Length:941
Number of Molecules:12
Biological Source:Human adenovirus D10
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Penton protein
Gene (Uniprot):L2
Chain IDs:U (auth: M)
Chain Length:519
Number of Molecules:1
Biological Source:Human adenovirus D10
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pre-hexon-linking protein III
Gene (Uniprot):L1
Chain IDs:V (auth: N)
Chain Length:559
Number of Molecules:1
Biological Source:Human adenovirus D10
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pre-hexon-linking protein VII
Gene (Uniprot):L4
Chain IDs:W (auth: O), X (auth: P)
Chain Length:227
Number of Molecules:2
Biological Source:Human adenovirus D10
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hexon-interlacing protein
Gene (Uniprot):pIX
Chain IDs:Y (auth: Q), Z (auth: R), AA (auth: S), BA (auth: T)
Chain Length:134
Number of Molecules:4
Biological Source:Human adenovirus D10
Ligand Molecules
Primary Citation
Identification of a novel fiber shaft structural motif and overexpression of key transcripts elucidated in human adenovirus D 10.
Plos Pathog. 22 e1014182 e1014182 (2026)
PMID: 42048387 DOI: 10.1371/journal.ppat.1014182

Abstact

Adenoviruses are widely used as vectors for subunit vaccines and oncolytic therapies. Efficient vectors must infect target cells and deliver therapeutic transgenes at high levels. Species D adenoviruses, such as human adenovirus type 10 (HAdV-D10), are promising candidates due to low seroprevalence in humans. Here, we present the cryo-electron microscopy structure of the HAdV-D10 capsid alongside transcriptomic profiling of infected cells to inform vector development. The fiber shaft, essential for cell entry, was resolved at 10 A, revealing a previously uncharacterized 'umbrella' motif. Viral transcript analysis using an ORF-centric pipeline uncovered key differences from HAdV-C5, including abundant expression of a transcript encoding a protein equivalent to mature protein VII. These findings highlight the importance of detailed vector characterization prior to clinical translation and support the advancement of HAdV-D10 as a next-generation platform for gene delivery and vaccine development.

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Chemical

Disease

Primary Citation of related structures
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