9R40 image
Deposition Date 2025-05-06
Release Date 2025-10-08
Last Version Date 2026-04-22
Entry Detail
PDB ID:
9R40
Keywords:
Title:
HaloTag bound to compound MRC71
Biological Source:
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.04 Å
R-Value Free:
0.28
R-Value Work:
0.23
Space Group:
P 43 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Haloalkane dehalogenase
Gene (Uniprot):dhaA
Chain IDs:A
Chain Length:306
Number of Molecules:1
Biological Source:Rhodococcus sp. (in: high G+C Gram-positive bacteria)
Primary Citation
State-selective small molecule degraders that preferentially remove aggregates and oligomers.
Nat Commun 16 10486 10486 (2025)
PMID: 41290659 DOI: 10.1038/s41467-025-65454-z

Abstact

TRIM21 is a unique E3 ligase that uses a clustering-based activation mechanism to degrade complex multimeric substrates. This activity underpins the targeted protein degradation technology Trim-Away and genetically encoded degraders that selectively target aggregated tau protein and prevent tauopathy. Here we describe small molecules that mimic TRIM21's natural epitope and function as either effective inhibitors or potent and selective degraders called TRIMTACs. TRIMTACs mediate degradation as rapidly as PROTACs but can also selectively degrade specific protein pools depending on assembly state. We demonstrate the utility of this state-specific degradation by selectively removing the pro-inflammatory signalling protein Myd88 when assembled into the Myddosome and the cell-death protein RIPK3 when polymerised into the Necrosome. We further show that TRIMTACs can inhibit seeded tau aggregation under conditions where a PROTAC is ineffective. These results highlight that TRIM21's clustering-based activation can be exploited by small molecule degraders to carry out state-selective degradation of therapeutic targets.

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Primary Citation of related structures
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