9QTG image
Deposition Date 2025-04-08
Release Date 2026-04-08
Last Version Date 2026-05-06
Entry Detail
PDB ID:
9QTG
Keywords:
Title:
Simkania negevensis CE-clan virulence factor SnCE1 in complex with hsSUMO1
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.55 Å
R-Value Free:
0.21
R-Value Work:
0.15
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Deubiquitinase and deneddylas
Gene (Uniprot):cdu2
Chain IDs:A
Chain Length:242
Number of Molecules:1
Biological Source:Simkania negevensis Z
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ubiquitin-related modif
Gene (Uniprot):SUMO1
Chain IDs:B
Chain Length:77
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CME B CYS modified residue
Primary Citation

Abstact

Gram-negative bacteria use a plethora of virulence factors to infect eukaryotic cells. CE-clan protease-related virulence factors were reported to act as deubiquitinases/ubiquitin-like specific proteases. Some have an additional acetyl-transferase activity. The molecular mechanisms underlying this dual activity and the physiological consequences are only marginally understood. Here, we report crystal structures for the Simkania negevensis virulence factor SnCE1 in apo-states and in complex with SUMO1. We confirm SnCE1 acting as an efficient deSUMOylase and discover an intrinsic autoacetyltransferase activity. Acetylation impairs SnCE1 tetramer formation structurally being incompatible with SUMO1 binding. We provide a model for regulation of SnCE1-mediated virulence by lysine acetylation modulating autoproteolytic processing and its subcellular distribution in the host cell. SnCE1 localizes to the endoplasmic reticulum in human cells and increases fragmentation of mitochondria. Our data provide mechanistic insights into how lysine acetylation of virulence factors is used to reprogram virulence adjusting it to the host cells' metabolic state.

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Disease

Primary Citation of related structures
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