9QQH image
Deposition Date 2025-03-31
Release Date 2026-04-01
Last Version Date 2026-05-27
Entry Detail
PDB ID:
9QQH
Keywords:
Title:
Mini-bacterioferritin from Candidatus Methanoperedens species BLZ2 oxidized then chemically reduced
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
2.08 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 3
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Bacterioferritin
Chain IDs:A, B, C, D
Chain Length:139
Number of Molecules:4
Biological Source:Candidatus Methanoperedens sp. BLZ2
Primary Citation
Mini-bacterioferritins: structural insight into a ferritin-like protein from the anaerobic methane-oxidising archaeon Candidatus Methanoperedens carboxydivorans.
Commun Biol 9 ? ? (2026)
PMID: 41865068 DOI: 10.1038/s42003-026-09796-4

Abstact

Ferritins are ubiquitous among life forms, as they are essential for iron homeostasis. Here, we unveiled a novel member of the ferritin family, baptised mini-bacterioferritin. The characterised mini-bacterioferritin was isolated from a microbial enrichment dominated by the methanotrophic archaeon 'Candidatus Methanoperedens carboxydivorans'. Its atomic resolution crystal structure reveals a 12-mer assembly with a diiron ferroxidase centre located within a four-helix bundle. Redox-cycling experiments on protein crystals reveal a shift in iron position at the active site, which follows the established ferritin catalytic cycle. The 12-mer sphere-like structure harboured six Fe-coproporphyrin III ligands, positioned at the interdimeric interface, a characteristic previously only found in 24-mer bacterioferritins. Phylogenetics, together with structure predictions of closely related proteins, revealed that mini-bacterioferritins form a distinct clade within the ferritin family that might conserve ancestral traits. Future research will need to investigate the physiological roles of these enzymes, which were unsuspectingly widely distributed among prokaryotes.

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Chemical

Disease

Primary Citation of related structures
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