9QK2 image
Deposition Date 2025-03-19
Release Date 2025-12-24
Last Version Date 2026-03-04
Entry Detail
PDB ID:
9QK2
Keywords:
Title:
Structure of the Complement classical and lectin pathway C3 convertase in complex with substrate C3
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Lama glama (Taxon ID: 9844)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Complement C4-A
Gene (Uniprot):C4A
Chain IDs:A, B (auth: C), D (auth: B)
Chain Length:1744
Number of Molecules:3
Biological Source:Homo sapiens
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Anti-C4b nanobody B12
Chain IDs:E (auth: D)
Chain Length:120
Number of Molecules:1
Biological Source:Lama glama
Polymer Type:polypeptide(L)
Molecule:Complement C2
Gene (Uniprot):C2
Chain IDs:C (auth: E)
Chain Length:752
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Complement C3
Gene (Uniprot):C3
Chain IDs:F, G
Chain Length:1663
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structural insights into C3 convertase activity of the classical pathway of complement.
Nat Commun 17 993 993 (2025)
PMID: 41413058 DOI: 10.1038/s41467-025-67730-4

Abstact

Immune protection by the complement system depends on C3 cleavage by C3 convertases that is critical to all three activation pathways. Structural data on convertase formation in the classical pathway and on C3-substrate binding to convertases is lacking. We present the cryo-EM structures of the proconvertase (C4b2), convertase (C4b2b), and convertase-substrate complex (C4b2b-C3) of the classical pathway. The data show that C2 and C4b form proconvertases and convertases like factor B and C3b of the alternative pathway. Substrate C3 binds C4b of the convertase through two interfaces: one also found in the SCIN-inhibited C3bBb dimer, and another facilitated by conformational changes in C3. Bending of C3 and swinging of the C2 protease bring the C3-scissile loop into the active site. The second, charged, C4b-interaction site favors C3- substrate binding, but upon cleavage repels product C3b. Thus, a charge switch-over mechanism effects the catalytic turnover of the convertases producing opsonin C3b.

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Primary Citation of related structures
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