9Q3U image
Deposition Date 2025-08-19
Release Date 2026-02-25
Last Version Date 2026-04-22
Entry Detail
PDB ID:
9Q3U
Keywords:
Title:
Cryo EM structure of elk ACE2 in complex with SARS-CoV-2 spike trimer
Biological Source:
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.37 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Angiotensin-converting enzyme
Chain IDs:A
Chain Length:622
Number of Molecules:1
Biological Source:Cervus canadensis
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike protein
Chain IDs:B, C, D
Chain Length:1284
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
Ligand Molecules
Primary Citation
Species- and variant-specific ACE2 compatibility shapes SARS-CoV-2 spillover potential in North American cervids.
Nat Commun ? ? ? (2026)
PMID: 41957014 DOI: 10.1038/s41467-026-71623-5

Abstact

Free-ranging white-tailed deer (WTD) are established SARS-CoV-2 reservoirs, but the susceptibility of other cervid species remains unclear. Here we integrate receptor analysis, structural modeling, and field surveillance to assess SARS-CoV-2 susceptibility across North American cervids. We identify species- and variant-specific differences in ACE2-spike compatibility. Elk ACE2 exhibits weak binding to the ancestral strain (Wuhan-Hu-1) and Delta spike receptor-binding domains (RBDs), likely due to a unique K31N substitution. In contrast, it shows stronger binding to Alpha, Beta, Gamma, and Omicron RBDs containing N501Y. Biophysical assays, gel filtration chromatography, and cryo-EM confirm stable complex formation between elk ACE2 and Alpha RBD, but not RBD from the ancestral strain. Despite weak binding, elk ACE2 supports viral entry and replication in vitro. However, surveillance revealed limited evidence of infection in the United States, contrasting with widespread WTD transmissions. These findings demonstrate that ACE2 compatibility alone is insufficient to predict reservoir potential and provide a framework for assessing species susceptibility to emerging coronaviruses.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
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