9PVG image
Deposition Date 2025-08-01
Release Date 2026-01-28
Last Version Date 2026-08-12
Entry Detail
PDB ID:
9PVG
Title:
Co-crystal structure of two CCM2 PTB domains bound to a KRIT1 peptide encompassing NPxF2 and NPxF3
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.29
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Malcavernin
Gene (Uniprot):CCM2
Chain IDs:A, B, C, F (auth: D)
Chain Length:180
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Krev interaction trapped prot
Gene (Uniprot):KRIT1
Chain IDs:D (auth: E), E (auth: F)
Chain Length:29
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Dual recruitment of two CCM2 molecules to KRIT1 suppresses KLF4 expression.
Nat Commun 17 ? ? (2026)
PMID: 41688454 DOI: 10.1038/s41467-026-69595-7

Abstact

Regulated expression of Kruppel like factor (KLF) transcription factors is essential for normal maintenance of endothelial cells, but loss of either K-Rev interaction trapped 1 (KRIT1) or cerebral cavernous malformations 2 (CCM2) proteins results in significant over-expression of KLF4 protein, causing the cerebrovascular disorder, cerebral cavernous malformations. Here, combining knockdown and reconstitution in an endothelial cell line, with co-immunoprecipitation, biophysical analysis of purified proteins, and co-crystallography, we find that to restrain KLF4 expression, two CCM2 proteins must cluster on a single KRIT1, with the PTB domain of each CCM2 protein binding either the second or third NPxF motif within KRIT1. This clustering of two PTB domains to a single peptide reveals a previously unobserved mechanism for PTB domain recruitment to partner proteins. Overall, our data support a model where clustering of two CCM2 molecules to one KRIT1 is required for normal regulation of expression of KLF4 transcription factor.

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Primary Citation of related structures
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