9PN1 image
Deposition Date 2025-07-18
Release Date 2026-06-10
Last Version Date 2026-06-10
Entry Detail
PDB ID:
9PN1
Title:
Crystal structure of Q108K:K40L:T51V:T53C:R58W:T29L:Y19W:Q4A mutant of cellular retinol binding protein II complex with 15-cis-retinal
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.26 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Retinol-binding protein 2
Gene (Uniprot):RBP2
Mutagens:Q108K:K40L:T51V:Y19W:T53C:R58W:T29L:Q4A
Chain IDs:A (auth: B), B (auth: C)
Chain Length:133
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Photoisomerization detected in a fully wavelength-tunable rhodopsin mimic system.
Acta Crystallogr D Struct Biol 82 664 671 (2026)
PMID: 42201784 DOI: 10.1107/S2059798326003839

Abstact

We describe the photoisomerization of the retinylidene protonated Schiff base in human retinol-binding protein II (hCRBPII) and the role of water molecules in this process. We characterize the photoisomerization of the 15-cis/all-trans retinylidene protonated Schiff base in this system using UV-visible spectroscopy and atomic-resolution X-ray crystallography. We further demonstrate a process where the pK(a) of the protonated Schiff base is substantially altered by light-induced dehydration of the binding pocket, suggesting novel pathways of photoswitching that rely not on isomerization or conformational change of the chromophore but rather on light-induced reorganization of the protein environment.

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Primary Citation of related structures
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