ISDA: 9PM0

Deposition Date 2025-07-16

Release Date 2026-06-24

Last Version Date 2026-06-24

Entry Detail

PDB ID:

9PM0

Keywords:

DNA BINDING PROTEIN

Title:

nucleosome containing histone variant macroH2A

Biological Source:

Source Organism(s):

Homo sapiens (Taxon ID: 9606)
Xenopus laevis (Taxon ID: 8355)
Mus musculus (Taxon ID: 10090)
synthetic construct (Taxon ID: 32630)

Expression System(s):

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.90 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Core histone macro-H2A.1
Gene (Uniprot):MACROH2A1
Chain IDs:A, B (auth: E)
Chain Length:161
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:O75367 Pfam ID:PF00125, PF16211

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2B 1.1
Chain IDs:C (auth: B), D (auth: F)
Chain Length:125
Number of Molecules:2
Biological Source:Xenopus laevis

UniProt ID:P02281 Pfam ID:PF00125

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H3.2
Chain IDs:E (auth: C), F (auth: G)
Chain Length:135
Number of Molecules:2
Biological Source:Xenopus laevis

UniProt ID:P84233 Pfam ID:PF00125

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H4
Chain IDs:G (auth: D), H
Chain Length:102
Number of Molecules:2
Biological Source:Xenopus laevis

UniProt ID:P62799 Pfam ID:PF15511

Polymer Type:polydeoxyribonucleotide
Molecule:DNA Widom601 (208bp) strand1
Chain IDs:I
Chain Length:208
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA Widom601 (208bp) strand2
Chain IDs:J
Chain Length:208
Number of Molecules:1
Biological Source:synthetic construct

Protein Blast

Polymer Type:polypeptide(L)
Molecule:scFv20
Chain IDs:K (auth: M), L (auth: N)
Chain Length:270
Number of Molecules:2
Biological Source:Mus musculus

Ligand Molecules

Primary Citation

nucleosome containing histone variant macroH2A

Tan, D, Sokolova, V.Show

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Primary Citation of related structures

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