9PIV image
Deposition Date 2025-07-11
Release Date 2026-03-04
Last Version Date 2026-04-29
Entry Detail
PDB ID:
9PIV
Keywords:
Title:
HIV-1 bnAb 9-71 in complex with BG505 MD39 SOSIP and RM19R
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp41 -
Gene (Uniprot):env
Mutagens:F519S, I559P, A561P, L568D, V570H, R585H, T605C
Chain IDs:F (auth: A), L (auth: C), R (auth: D)
Chain Length:162
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp160
Gene (Uniprot):env
Mutagens:T106E, M271I, F288L, R304V, A319Y, T332N, N363Q, A501C, E509R, K510R, A512R, V513R
Chain IDs:E (auth: B), K (auth: E), Q (auth: F)
Chain Length:512
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RM19R light chain Fv
Chain IDs:A (auth: G), G (auth: I), M (auth: K)
Chain Length:107
Number of Molecules:3
Biological Source:Macaca mulatta
Protein Blast
Polymer Type:polypeptide(L)
Molecule:9-71 heavy chain Fv
Chain IDs:C (auth: H), I (auth: M), O (auth: N)
Chain Length:126
Number of Molecules:3
Biological Source:Homo sapiens
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RM19R heavy chain Fv
Chain IDs:B (auth: J), H (auth: O), N (auth: P)
Chain Length:121
Number of Molecules:3
Biological Source:Macaca mulatta
Protein Blast
Polymer Type:polypeptide(L)
Molecule:9-71 light chain Fv
Chain IDs:D (auth: L), J (auth: Q), P (auth: R)
Chain Length:109
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation

Abstact

HIV vaccine strategies include aims to elicit broadly neutralizing antibodies (bnAbs) targeting the CD4-binding site, that are derived from immunoglobulin heavy-chain variable genes 1-2 (V(H)1-2) and 1-46 (V(H)1-46). Here, we present an integrated analysis of V(H)1-46 bnAbs, including in vitro functional studies, cryo-electron microscopy structures of two V(H)1-46 bnAbs (1-23 and 9-71) complexed with envelope trimers, and comprehensive structural and immunogenetic analyses, to help guide vaccine design. We show that V(H)1-46-derived bnAbs use diverse light-chain variable (V(K)/V(L)) genes and LCDR3 lengths commonly found in human antibody repertoires, which generate unique LCDR3 signatures that influence both the antibody paratope and approach angle. We identify three V(H)1-46 bnAb classes, 1B2530 (V(L)1-47), CH235 (V(K)3-15), and 561 (V(K)3-20), with the 561 class further subdivided into types I and II. Our findings indicate that V(H)1-46 priming immunogens should be tailored to each bnAb class, with 561-class bnAbs presenting optimal targets for germline-targeting vaccine design.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback