9PIE image
Deposition Date 2025-07-10
Release Date 2026-06-03
Last Version Date 2026-06-03
Entry Detail
PDB ID:
9PIE
Title:
Cryo-EM structure of human NCC with chlorthalidone (C2)
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Danio rerio (Taxon ID: 7955)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.01 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Solute carrier family 12 memb
Gene (Uniprot):SLC12A3
Chain IDs:A, C (auth: B)
Chain Length:890
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Solute carrier family 12 memb
Gene (Uniprot):slc12a2
Chain IDs:B (auth: D), D (auth: C)
Chain Length:202
Number of Molecules:2
Biological Source:Danio rerio
Primary Citation
Molecular mechanisms of thiazide-like diuretics-mediated inhibition of the human Na-Cl cotransporter.
Nat Commun 16 7740 7740 (2025)
PMID: 40830368 DOI: 10.1038/s41467-025-62714-w

Abstact

Thiazide-type and thiazide-like diuretics are structurally distinct first-line antihypertensive drugs that target the sodium-chloride cotransporter (NCC) in the kidney. Thiazide-like diuretics are reported to have better cardioprotective effects than thiazide-type diuretics, but whether this is due to differences in NCC-inhibition mechanisms, if there is any, remains unclear. To understand the molecular mechanisms of NCC inhibition by thiazide-like diuretics, we determine the structures of human NCC (hNCC) bound to two of the most widely used thiazide-like diuretics, chlorthalidone and indapamide, using cryogenic electron microscopy (cryo-EM). Structural analyses reveal shared features and distinctions between NCC-inhibition by thiazide-like and thiazide-type diuretics. Furthermore, structural comparisons allow us to identify polymorphisms in hNCC that have substantial differential effects on the potencies of specific thiazide-like and thiazide-type diuretics. Our work provides important insights into the molecular pharmacology of NCC and a blueprint for developing precision medicine to manage hypertension with thiazide-like and thiazide-type diuretics.

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