9PFW image
Deposition Date 2025-07-07
Release Date 2026-04-01
Last Version Date 2026-05-13
Entry Detail
PDB ID:
9PFW
Title:
Crystal structure of selenomethionine-substituted N-oxygenase RohS from Pseudomonas syringae pv. tomato str. DC3000 (PstoRohS)
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 42
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Iron-containing redox enzyme
Gene (Uniprot):PSPTO_3868
Chain IDs:A
Chain Length:306
Number of Molecules:1
Biological Source:Pseudomonas syringae pv. tomato str. DC3000
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Primary Citation
Crystal structure of RohS, a heme-oxygenase-like N-oxygenase from azomycin biosynthesis.
J.Biol.Chem. 302 111389 111389 (2026)
PMID: 41866038 DOI: 10.1016/j.jbc.2026.111389

Abstact

The nitro group is an important functional group found in the nitroimidazoles, antibiotic therapeutics for anaerobic pathogens. In the biosynthetic pathway to the nitroimidazole antibiotic azomycin, a nitro-forming enzyme RohS-a member of the heme-oxygenase-like dimetal/domain-containing oxidase/oxygenase (HDO) family-catalyzes a six-electron oxidation of 2-aminoimidazole to 2-nitroimidazole. Here, we present the 2.20 A resolution crystal structure of RohS and identify a potential active site pocket consisting of seven key residues important for metal coordination. By comparing the structures and sequences of two RohS homologs-one functionally active and one inactive-we convert the inactive RohS to its active form, thus revealing a key residue for metal coordination in RohS catalysis. Altogether, our work provides a structural basis for further mechanistic investigation of this six-electron oxidation process and provides insight into the expanding repertoire of the HDO protein family and nitro-formation N-oxygenases.

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Primary Citation of related structures
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