9PF9 image
Deposition Date 2025-07-03
Release Date 2025-12-24
Last Version Date 2026-03-04
Entry Detail
PDB ID:
9PF9
Keywords:
Title:
X-ray crystal structure of ATX-350-2 Fab bound to Epstein-Barr virus glycoprotein 350
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.93 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 43 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:BLLF1
Gene (Uniprot):BLLF1
Chain IDs:C (auth: G)
Chain Length:470
Number of Molecules:1
Biological Source:human gammaherpesvirus 4
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Fab ATX-350-2 heavy chain
Chain IDs:B (auth: H)
Chain Length:220
Number of Molecules:1
Biological Source:Mus musculus
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Fab ATX-350-2 light chain
Chain IDs:A (auth: L)
Chain Length:214
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Transgenic mouse-derived human monoclonal antibodies targeting EBV gp350 and gp42 provide basis for therapeutic development.
Cell Rep Med 7 102618 102618 (2026)
PMID: 41707657 DOI: 10.1016/j.xcrm.2026.102618

Abstact

Epstein-Barr virus (EBV) causes infectious mononucleosis and contributes to neurodegenerative disorders and malignancies, particularly in immune-compromised hosts. Transplant patients face high risk of post-transplant lymphoproliferative disease, a life-threatening EBV-driven lymphoma. There are no EBV-specific vaccines or treatments; however, neutralizing antibodies against EBV glycoproteins may offer utility as therapeutic agents. EBV entry into B cells involves gp350, which binds complement receptors, and gp42, which engages HLA class II to trigger fusion. Most existing monoclonal antibodies (mAbs) against these antigens are non-human, limiting clinical use. Using a transgenic mouse model, we generate two gp350 and eight gp42 genetically human neutralizing mAbs that block receptor binding. Structural analyses reveal extended sites of vulnerability relevant to vaccine development. Delivery of a gp42 mAb protects humanized mice from EBV challenge, while a gp350 mAb provides partial protection. These mAbs highlight the utility of transgenic mice to produce therapeutic mAbs for preventing EBV-driven disease.

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Chemical

Disease

Primary Citation of related structures
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