9PDR image
Deposition Date 2025-07-01
Release Date 2026-10-14
Last Version Date 2026-10-14
Entry Detail
PDB ID:
9PDR
Title:
Composite map of PIC-Med-SWI/SNF-Nucleosome
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.84 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:General transcription and DNA
Gene (Uniprot):RAD3
Chain IDs:A (auth: A0), GC (auth: B0)
Chain Length:778
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:General transcription and DNA
Gene (Uniprot):TFB1
Chain IDs:B (auth: A1), HC (auth: B1)
Chain Length:642
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:General transcription and DNA
Gene (Uniprot):TFB2
Chain IDs:C (auth: A2), IC (auth: B2)
Chain Length:513
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:RNA polymerase II transcripti
Gene (Uniprot):TFB3
Chain IDs:D (auth: A3), JC (auth: B3)
Chain Length:321
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:General transcription and DNA
Gene (Uniprot):TFB4
Chain IDs:E (auth: A4), KC (auth: B4)
Chain Length:338
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:General transcription and DNA
Gene (Uniprot):TFB5
Chain IDs:F (auth: A5), LC (auth: B5)
Chain Length:72
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:General transcription and DNA
Gene (Uniprot):SSL1
Chain IDs:G (auth: A6), MC (auth: B6)
Chain Length:461
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:General transcription and DNA
Gene (Uniprot):SSL2
Chain IDs:H (auth: A7), NC (auth: B7)
Chain Length:843
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:SWI/SNF chromatin-remodeling
Gene (Uniprot):SNF5
Chain IDs:I (auth: A8), YA (auth: NF), NB (auth: SF), OC (auth: B8), EE (auth: nF), TE (auth: sF)
Chain Length:905
Number of Molecules:6
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Transcription initiation fact
Gene (Uniprot):TAF14
Chain IDs:J (auth: A9), PC (auth: B9)
Chain Length:244
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase I
Gene (Uniprot):RPO21
Chain IDs:K (auth: AA), HA (auth: MA), QC (auth: BA), ND (auth: mA)
Chain Length:1733
Number of Molecules:4
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase I
Gene (Uniprot):RPB2
Chain IDs:L (auth: AB), RC (auth: BB)
Chain Length:1224
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase I
Gene (Uniprot):RPB3
Chain IDs:M (auth: AC), SC (auth: BC)
Chain Length:318
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase I
Gene (Uniprot):RPB4
Chain IDs:N (auth: AD), TC (auth: BD)
Chain Length:221
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases
Gene (Uniprot):RPB5
Chain IDs:O (auth: AE), UC (auth: BE)
Chain Length:215
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases
Gene (Uniprot):RPO26
Chain IDs:P (auth: AF), VC (auth: BF)
Chain Length:155
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase I
Gene (Uniprot):RPB7
Chain IDs:Q (auth: AG), WC (auth: BG)
Chain Length:171
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases
Gene (Uniprot):RPB8
Chain IDs:R (auth: AH), XC (auth: BH)
Chain Length:146
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase I
Gene (Uniprot):RPB9
Chain IDs:S (auth: AI), YC (auth: BI)
Chain Length:122
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases
Gene (Uniprot):RPB10
Chain IDs:T (auth: AJ), ZC (auth: BJ)
Chain Length:70
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase I
Gene (Uniprot):RPB11
Chain IDs:U (auth: AK), AD (auth: BK)
Chain Length:120
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases
Gene (Uniprot):RPC10
Chain IDs:V (auth: AL), BD (auth: BL)
Chain Length:70
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Transcription initiation fact
Gene (Uniprot):SUA7
Chain IDs:W (auth: AM), CD (auth: BM)
Chain Length:345
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polydeoxyribonucleotide
Molecule:promoter DNA
Chain IDs:X (auth: AN), DD (auth: BN)
Chain Length:238
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:TATA-box-binding protein
Gene (Uniprot):SPT15
Chain IDs:Y (auth: AO), ED (auth: BO)
Chain Length:240
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Transcription initiation fact
Gene (Uniprot):TFG1
Chain IDs:Z (auth: AQ), FD (auth: BQ)
Chain Length:735
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Transcription initiation fact
Gene (Uniprot):TFG2
Chain IDs:AA (auth: AR), GD (auth: BR)
Chain Length:400
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Transcription elongation fact
Gene (Uniprot):DST1
Chain IDs:BA (auth: AS), HD (auth: BS)
Chain Length:309
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polydeoxyribonucleotide
Molecule:promoter DNA
Chain IDs:CA (auth: AT), ID (auth: BT)
Chain Length:238
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Transcription initiation fact
Gene (Uniprot):TOA1
Chain IDs:DA (auth: AU), JD (auth: BU)
Chain Length:286
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Transcription initiation fact
Gene (Uniprot):TOA2
Chain IDs:EA (auth: AV), KD (auth: BV)
Chain Length:122
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Transcription initiation fact
Gene (Uniprot):TFA1
Chain IDs:FA (auth: AW), LD (auth: BW)
Chain Length:482
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Transcription initiation fact
Gene (Uniprot):TFA2
Chain IDs:GA (auth: AX), MD (auth: BX)
Chain Length:328
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Mediator of RNA polymerase II
Gene (Uniprot):MED6
Chain IDs:IA (auth: Ma), OD (auth: ma)
Chain Length:295
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Mediator of RNA polymerase II
Gene (Uniprot):MED8
Chain IDs:JA (auth: Mb), PD (auth: mb)
Chain Length:223
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Mediator of RNA polymerase II
Gene (Uniprot):MED11
Chain IDs:KA (auth: Mc), QD (auth: mc)
Chain Length:115
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Mediator of RNA polymerase II
Gene (Uniprot):SRB4
Chain IDs:LA (auth: Md), RD (auth: md)
Chain Length:687
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Mediator of RNA polymerase II
Gene (Uniprot):SRB5
Chain IDs:MA (auth: Me), SD (auth: me)
Chain Length:307
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Mediator of RNA polymerase II
Gene (Uniprot):SRB2
Chain IDs:NA (auth: Mf), TD (auth: mf)
Chain Length:210
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Mediator of RNA polymerase II
Gene (Uniprot):SRB6
Chain IDs:OA (auth: Mg), UD (auth: mg)
Chain Length:121
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Mediator of RNA polymerase II
Gene (Uniprot):MED4
Chain IDs:PA (auth: Mh), VD (auth: mh)
Chain Length:284
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Mediator of RNA polymerase II
Gene (Uniprot):MED7
Chain IDs:QA (auth: Mi), WD (auth: mi)
Chain Length:222
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Mediator of RNA polymerase II
Gene (Uniprot):CSE2
Chain IDs:RA (auth: Mj), XD (auth: mj)
Chain Length:149
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Mediator of RNA polymerase II
Gene (Uniprot):NUT2
Chain IDs:SA (auth: Mk), YD (auth: mk)
Chain Length:157
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Mediator of RNA polymerase II
Gene (Uniprot):RGR1
Chain IDs:TA (auth: Ml), XB (auth: T4), DC (auth: t4), ZD (auth: ml)
Chain Length:1082
Number of Molecules:4
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Mediator of RNA polymerase II
Gene (Uniprot):ROX3
Chain IDs:UA (auth: Mm), AE (auth: mm)
Chain Length:220
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Mediator of RNA polymerase II
Gene (Uniprot):SRB7
Chain IDs:VA (auth: Mn), BE (auth: mn)
Chain Length:140
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Mediator of RNA polymerase II
Gene (Uniprot):SOH1
Chain IDs:WA (auth: Mo), CE (auth: mo)
Chain Length:127
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Mediator of RNA polymerase II
Gene (Uniprot):MED1
Chain IDs:XA (auth: Mp), DE (auth: mp)
Chain Length:566
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Transcription regulatory prot
Gene (Uniprot):SNF2
Chain IDs:ZA (auth: NP), PB (auth: SH), FE (auth: nP), VE (auth: sH)
Chain Length:1703
Number of Molecules:4
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Histone H3.2
Chain IDs:AB (auth: No), EB (auth: Ns), GE (auth: no), KE (auth: ns)
Chain Length:136
Number of Molecules:4
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Molecule:Histone H4
Chain IDs:BB (auth: Np), FB (auth: Nt), HE (auth: np), LE (auth: nt)
Chain Length:103
Number of Molecules:4
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Molecule:Histone H2A type 1
Chain IDs:CB (auth: Nq), GB (auth: Nu), IE (auth: nq), ME (auth: nu)
Chain Length:130
Number of Molecules:4
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Molecule:Histone H2B 1.1
Chain IDs:DB (auth: Nr), HB (auth: Nv), JE (auth: nr), NE (auth: nv)
Chain Length:126
Number of Molecules:4
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Molecule:Transcription regulatory prot
Gene (Uniprot):SNF12
Chain IDs:IB (auth: SA), OE (auth: sA)
Chain Length:566
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:SWI/SNF complex subunit SWI3
Gene (Uniprot):SWI3
Chain IDs:JB (auth: SB), LB (auth: SD), PE (auth: sB), RE (auth: sD)
Chain Length:825
Number of Molecules:4
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Transcription regulatory prot
Gene (Uniprot):SNF6
Chain IDs:KB (auth: SC), QE (auth: sC)
Chain Length:332
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:SWI/SNF global transcription
Gene (Uniprot):SWP82
Chain IDs:MB (auth: SE), SE (auth: sE)
Chain Length:623
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:unsigned peptide of SWI/SNF
Chain IDs:OB (auth: SG), UE (auth: sG)
Chain Length:47
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:SWI/SNF chromatin-remodeling
Gene (Uniprot):SWI1
Chain IDs:QB (auth: SI), WE (auth: sI)
Chain Length:1314
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Regulator of Ty1 transpositio
Gene (Uniprot):RTT102
Chain IDs:RB (auth: SJ), XE (auth: sJ)
Chain Length:157
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 7
Gene (Uniprot):ARP7
Chain IDs:SB (auth: SK), YE (auth: sK)
Chain Length:477
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Actin-like protein ARP9
Gene (Uniprot):ARP9
Chain IDs:TB (auth: SL), ZE (auth: sL)
Chain Length:467
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Mediator of RNA polymerase II
Gene (Uniprot):MED2
Chain IDs:UB (auth: T1), AC (auth: t1)
Chain Length:431
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Mediator of RNA polymerase II
Gene (Uniprot):PGD1
Chain IDs:VB (auth: T2), BC (auth: t2)
Chain Length:397
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Mediator of RNA polymerase II
Gene (Uniprot):NUT1
Chain IDs:WB (auth: T3), CC (auth: t3)
Chain Length:1132
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Mediator of RNA polymerase II
Gene (Uniprot):GAL11
Chain IDs:YB (auth: T5), EC (auth: t5)
Chain Length:1081
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Mediator of RNA polymerase II
Gene (Uniprot):SIN4
Chain IDs:ZB (auth: T6), FC (auth: t6)
Chain Length:974
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Primary Citation
Composite map of PIC-Med-SWI/SNF-Nucleosome
To Be Published ? ? ? (?)
Primary Citation of related structures
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