9P6H image
Deposition Date 2025-06-19
Release Date 2025-07-16
Last Version Date 2025-07-16
Entry Detail
PDB ID:
9P6H
Title:
Structure of P. gingivalis PorK and PorN complexes from cryo electron microscopy
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
2.75 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Gliding motility protein GldN
Gene (Uniprot):PG_0291
Chain IDs:A
Chain Length:254
Number of Molecules:1
Biological Source:Porphyromonas gingivalis W83
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Lipoprotein, putative
Gene (Uniprot):PG_0288
Chain IDs:B
Chain Length:447
Number of Molecules:1
Biological Source:Porphyromonas gingivalis W83
Primary Citation
Insights into type IX secretion from PorKN cogwheel structure bound to PorG and attachment complexes.
Nat Commun 16 7735 7735 (2025)
PMID: 40830366 DOI: 10.1038/s41467-025-63163-1

Abstact

The Type IX Secretion System exports proteins across the outer membrane (OM) of bacteria in the Bacteroidota phylum, however, the mechanistic details remain unknown. In Porphyromonas gingivalis the core components of the multi-protein complex are the Sov translocon, Attachment Complexes (PorQ, U, V, Z), PorLM molecular motors and PorKN rings. Here, we present a ~ 3.5 Å cryo-EM structure of the periplasmic rings comprising 32-33 subunits each of PorK and PorN. Additionally, we show the presence of a critical disulfide bond between PorK and the OM protein PorG that is essential for protein secretion and demonstrate that the Attachment Complexes bind to, and are localized above, the PorKN rings. Overall, each ring resembles a cogwheel with PorN forming cog-like projections that we propose engage with the PorLM motor to drive the rotation of the PorKN cogwheel together with PorG and associated Attachment Complexes, thus providing the energy to complete protein secretion and the coordinated cell surface attachment of the secreted cargo.

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