9OMG image
Deposition Date 2025-05-13
Release Date 2025-11-05
Last Version Date 2026-02-25
Entry Detail
PDB ID:
9OMG
Title:
Cryo-EM structure of rhesus antibody V033-a.I1 in complex with HIV Env trimer Q23.17 MD39
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Macaca mulatta (Taxon ID: 9544)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HIV Env gp120
Chain IDs:A, C, D (auth: E)
Chain Length:469
Number of Molecules:3
Biological Source:Homo sapiens
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HIV Env gp41 ectodomain
Chain IDs:B, E (auth: F), F (auth: G)
Chain Length:153
Number of Molecules:3
Biological Source:Homo sapiens
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V033-Int1 heavy chain
Chain IDs:G (auth: H)
Chain Length:244
Number of Molecules:1
Biological Source:Macaca mulatta
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V033-Int1 light chain
Chain IDs:H (auth: L)
Chain Length:214
Number of Molecules:1
Biological Source:Macaca mulatta
Ligand Molecules
Primary Citation

Abstact

Broadly neutralizing antibodies (bNAbs) are rarely elicited during HIV-1 infection. To identify obstacles to bNAb development, we longitudinally studied 122 rhesus macaques infected by 1 of 16 different simian-human immunodeficiency viruses (SHIVs). We identified the V2 apex region of the envelope (Env) as the most common bNAb target and a subset of Envs that preferentially elicited these antibodies. In 10 macaques, we delineated Env-antibody coevolution from B cell priming to bNAb development. Antibody phylogenies revealed permissive developmental pathways guided by evolving Envs that contained few mutations in or near the V2 apex C-strand, which were a sensitive indicator of apex-targeted responses. The absence of such mutations reflected a failure in bNAb priming. These results indicate that efficiency of B cell priming, and not complexities in Env-guided affinity maturation, is a primary obstacle to V2 apex bNAb elicitation in SHIV-infected macaques and identify specific HIV-1 Envs to advance as vaccine platforms.

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Chemical

Disease

Primary Citation of related structures
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