9ODU image
Deposition Date 2025-04-27
Release Date 2026-04-29
Last Version Date 2026-04-29
Entry Detail
PDB ID:
9ODU
Keywords:
PROTON TRANSPORT
Title:
Yeast V-ATPase bound to Rtc5p, rotary state 2
Biological Source:
Source Organism(s):
Saccharomyces cerevisiae (Taxon ID: 4932)
Expression System(s):
Escherichia coli
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9ODU validation report missing
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:H(+)-transporting two-sector
Gene (Uniprot):SCRG_00677
Chain IDs:A, B (auth: C), C (auth: E)
Chain Length:160
Number of Molecules:3
Biological Source:Saccharomyces cerevisiae
UniProt ID:B3LH69
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit
Gene (Uniprot):VMA2
Chain IDs:DA (auth: B), EA (auth: D), FA (auth: F)
Chain Length:160
Number of Molecules:3
Biological Source:Saccharomyces cerevisiae
UniProt ID:P16140
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit
Gene (Uniprot):VMA4
Chain IDs:D (auth: G), F (auth: I), H (auth: K)
Chain Length:233
Number of Molecules:3
Biological Source:Saccharomyces cerevisiae
UniProt ID:P22203
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit
Gene (Uniprot):VMA10
Mutagens:N-terminal FLAG tag
Chain IDs:E (auth: H), G (auth: J), I (auth: L)
Chain Length:114
Number of Molecules:3
Biological Source:Saccharomyces cerevisiae
UniProt ID:P48836
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit
Gene (Uniprot):VMA8
Chain IDs:J (auth: M)
Chain Length:256
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P32610
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit
Gene (Uniprot):VMA7
Chain IDs:K (auth: N)
Chain Length:118
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P39111
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit
Gene (Uniprot):VMA5
Chain IDs:L (auth: O)
Chain Length:392
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P31412
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit
Gene (Uniprot):VMA13
Chain IDs:BA (auth: P)
Chain Length:478
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P41807
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit
Gene (Uniprot):VPH1
Chain IDs:CA (auth: Q)
Chain Length:840
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P32563
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Restriction of telomere cappi
Gene (Uniprot):RTC5
Mutagens:N-terminal 6xHis tag
Chain IDs:M (auth: R)
Chain Length:567
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:B3LJG1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit
Gene (Uniprot):VMA6
Chain IDs:N (auth: S)
Chain Length:345
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P32366
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit
Gene (Uniprot):VMA16
Chain IDs:O (auth: T)
Chain Length:213
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P23968
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit
Gene (Uniprot):VMA11
Chain IDs:P (auth: U)
Chain Length:164
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P32842
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit
Gene (Uniprot):VMA3
Chain IDs:Q (auth: V), R (auth: W), S (auth: X), T (auth: Y), U (auth: Z), V (auth: a), W (auth: b), X (auth: c)
Chain Length:160
Number of Molecules:8
Biological Source:Saccharomyces cerevisiae
UniProt ID:P25515
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit
Gene (Uniprot):VMA9
Chain IDs:Y (auth: d)
Chain Length:517
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:Q3E7B6
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V0 assembly protein 1
Gene (Uniprot):VOA1
Chain IDs:Z (auth: e)
Chain Length:265
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P53262
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Yeast V-ATPase subunit f
Gene (Uniprot):YPR170W-B
Chain IDs:AA (auth: f)
Chain Length:85
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P0C5R9
Ligand Molecules
ADP
Primary Citation
Yeast V-ATPase bound to Rtc5p, rotary state 2
To Be Published ? ? ? (?)
Primary Citation of related structures
9NN1
9MOY
Feedback Form
Name
Email
Institute
Feedback