9NZK image
Deposition Date 2025-04-01
Release Date 2025-10-08
Last Version Date 2026-02-25
Entry Detail
PDB ID:
9NZK
Title:
Crystal structure of Yck2 with LY364947
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
H 3
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:non-specific serine/threonine
Gene (Uniprot):FOB64_000203
Chain IDs:A
Chain Length:309
Number of Molecules:1
Biological Source:Candida albicans
Primary Citation
Structure-activity Relationship for Diarylpyrazoles as Inhibitors of the Fungal Kinase Yck2.
Biorxiv ? ? ? (2025)
PMID: 40672256 DOI: 10.1101/2025.07.12.664496

Abstact

Candida albicans is a growing global health threat, causing 1.5 million invasive infections and 1 million deaths annually. Yeast casein kinase 2 (Yck2) in C. albicans has emerged as an antifungal target of the kinase inhibitor LY364947 (LY). Herein, we report Yck2 structure-activity relationships for 3,4- and 3,4,5-substituted pyrazole analogs of LY. X-ray crystallography and in vitro profiling revealed the importance of the hinge-binding heterocycle for Yck2 inhibition and fungal kinome selectivity. A hydrogen-bond network between the inhibitor, a bound water molecule, and catalytic residues within the ATP pocket was identified as a key determinant of selectivity over other fungal and human kinases. Phenol analog 11 showed remarkable selectivity for Yck2 and Yck22 over all other C. albicans protein kinases. Several of the LY analogs, including 11, demonstrated improved antifungal activity. These findings provide a framework for translating human kinase inhibitors into highly selective antifungal Yck2 inhibitors.

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Primary Citation of related structures
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