9NWN image
Deposition Date 2025-03-24
Release Date 2025-08-27
Last Version Date 2026-03-11
Entry Detail
PDB ID:
9NWN
Keywords:
Title:
Structure of minimal CRISPR polymerase bound to ApNHpp
Biological Source:
Source Organism(s):
Escherichia coli (Taxon ID: 562)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.28 Å
R-Value Free:
0.24
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:MCpol domain-containing prote
Gene (Uniprot):DU321_04150
Chain IDs:A (auth: B), B (auth: A)
Chain Length:125
Number of Molecules:2
Biological Source:Escherichia coli
Primary Citation
A miniature CRISPR-Cas10 enzyme confers immunity by inhibitory signalling.
Nature 647 997 1004 (2025)
PMID: 41034576 DOI: 10.1038/s41586-025-09569-9

Abstact

Microbial and viral co-evolution has created immunity mechanisms involving oligonucleotide signalling that share mechanistic features with human antiviral systems(1). In these pathways, including cyclic oligonucleotide-based antiphage signalling systems (CBASSs) and type III CRISPR systems in bacteria and cyclic GMP-AMP synthase-stimulator of interferon genes (cGAS-STING) in humans, oligonucleotide synthesis occurs upon detection of virus or foreign genetic material in the cell, triggering the antiviral response(2-4). Here, in an unexpected inversion of this process, we show that the CRISPR-related enzyme mCpol synthesizes cyclic oligonucleotides constitutively as part of an active mechanism that represses a toxic effector. Cell-based experiments demonstrated that the absence or loss of mCpol-produced cyclic oligonucleotides triggers cell death, preventing the spread of viruses that attempt immune evasion by depleting host cyclic nucleotides. Structural and mechanistic investigation revealed mCpol to be a di-adenylate cyclase whose product, c-di-AMP, prevents toxic oligomerization of the effector protein 2TMbeta. Analysis of cells by fluorescence microscopy showed that lack of mCpol allows 2TMbeta-mediated cell death due to inner membrane collapse. These findings unveil a powerful defence strategy against virus-mediated immune suppression, expanding our understanding of the role of oligonucleotides in immunity.

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Primary Citation of related structures
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