9MSK image
Deposition Date 2025-01-09
Release Date 2026-07-01
Last Version Date 2026-07-01
Entry Detail
PDB ID:
9MSK
Title:
Structure of hepatitis C virus envelope glycoprotein E2 core from isolate H77 bound to neutralizing antibody RM3-26
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.23 Å
R-Value Free:
0.27
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
C 1 2 1
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein E2
Chain IDs:C (auth: E)
Chain Length:191
Number of Molecules:1
Biological Source:Hepatitis C virus (isolate 1)
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RM3-26 fab heavy chain
Chain IDs:A (auth: H)
Chain Length:223
Number of Molecules:1
Biological Source:Macaca mulatta
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RM3-26 fab light chain
Chain IDs:B (auth: L)
Chain Length:212
Number of Molecules:1
Biological Source:Macaca mulatta
Ligand Molecules
Primary Citation
The conserved bridging domain on HCV E1E2 glycoprotein complex is targeted by neutralizing antibodies from diverse lineages.
Biorxiv ? ? ? (2025)
PMID: 41280117 DOI: 10.1101/2025.11.05.686883

Abstact

The induction of potent and cross-reactive neutralizing antibody (nAb) responses remains a challenge in vaccine development against antigenically diverse viruses such as hepatitis C virus (HCV). The HCV E1E2 glycoprotein complex contains two major neutralizing sites: the neutralizing face (NF) and the less explored bridging domain (BD). Here, we characterized 25 BD-targeting nAbs isolated from infection or immunization. These antibodies arise from diverse B cell lineages but share convergent CDRH3 features. Epitope mapping by alanine scanning and negative-stain electron microscopy revealed overlapping epitopes on BD spanning antigenic regions AR4 and AR5, with variable back layer engagement. The crystal structure of a non-human primate BD nAb RM3-26 in complex with E2 uncovered a back layer-directed recognition mode analogous to that of the human nAb hcab40. Together, BD- and NF-directed nAbs exhibited additivity in their neutralization, highlighting BD as a conserved site of vulnerability on HCV and a valuable target for rational vaccine design.

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Primary Citation of related structures
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