9M5A image
Deposition Date 2025-03-05
Release Date 2026-07-01
Last Version Date 2026-07-08
Entry Detail
PDB ID:
9M5A
Keywords:
PHOTOSYNTHESIS
Title:
cryo-EM structure of PSII D1-V185T from Thermosynechococcus vestitus BP-1
Biological Source:
Source Organism(s):
Thermosynechococcus vestitus BP-1 (Taxon ID: 197221)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
1.88 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9M5A validation report missing
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II protein D1 3
Gene (Uniprot):psbA3
Chain IDs:A, Q (auth: a)
Chain Length:360
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q8DIV4 Pfam ID:PF00124 EC:1.10.3.9
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II CP47 reaction
Gene (Uniprot):psbB
Chain IDs:B, R (auth: b)
Chain Length:510
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q8DIQ1 Pfam ID:PF00421
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II CP43 reaction
Gene (Uniprot):psbC
Chain IDs:C, S (auth: c)
Chain Length:461
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q8DIF8 Pfam ID:PF00421
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II D2 protein
Gene (Uniprot):psbD1, psbD2
Chain IDs:D, T (auth: d)
Chain Length:352
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q8CM25 Pfam ID:PF00124 EC:1.10.3.9
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit alpha
Gene (Uniprot):psbE
Chain IDs:GA (auth: E), JA (auth: e)
Chain Length:84
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q8DIP0 Pfam ID:PF00283, PF00284
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit beta
Gene (Uniprot):psbF
Chain IDs:E (auth: F), U (auth: f)
Chain Length:45
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q8DIN9 Pfam ID:PF00283
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psbH
Chain IDs:F (auth: H), V (auth: h)
Chain Length:66
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q8DJ43 Pfam ID:PF00737
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psbI
Chain IDs:G (auth: I), W (auth: i)
Chain Length:38
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q8DJZ6 Pfam ID:PF02532
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psbJ
Chain IDs:H (auth: J), X (auth: j)
Chain Length:40
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:P59087 Pfam ID:PF01788
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psbK
Chain IDs:I (auth: K), Y (auth: k)
Chain Length:46
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q9F1K9 Pfam ID:PF02533
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psbL
Chain IDs:J (auth: L), Z (auth: l)
Chain Length:37
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q8DIN8 Pfam ID:PF02419
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psbM
Chain IDs:K (auth: M), AA (auth: m)
Chain Length:36
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q8DHA7 Pfam ID:PF05151
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II extrinsic prot
Gene (Uniprot):psbO
Chain IDs:HA (auth: O), KA (auth: o)
Chain Length:272
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:P0A431 Pfam ID:PF01716
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psbT
Chain IDs:L (auth: T), BA (auth: t)
Chain Length:32
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q8DIQ0 Pfam ID:PF01405
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II extrinsic prot
Gene (Uniprot):psbU
Chain IDs:M (auth: U), CA (auth: u)
Chain Length:134
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q9F1L5 Pfam ID:PF06514
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II extrinsic prot
Gene (Uniprot):psbV
Chain IDs:N (auth: V), DA (auth: v)
Chain Length:163
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:P0A386 Pfam ID:PF14495
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psbX
Chain IDs:O (auth: X), EA (auth: x)
Chain Length:41
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q9F1R6 Pfam ID:PF06596
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psb30
Chain IDs:P (auth: Y), FA (auth: y)
Chain Length:46
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q8DJI1 Pfam ID:PF05969
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psbZ
Chain IDs:IA (auth: Z), LA (auth: z)
Chain Length:62
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q8DHJ2 Pfam ID:PF01737
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
FME G MET modified residue
Ligand Molecules
BCR
BCT
CA
CL
CLA
DGD
FE2
HEC
HEM
LHG
LMG
LMT
MG
OEX
PHO
PL9
RRX
SQD
UNL
Primary Citation
Cryo-EM structure of photosystem II D1-V185T mutant from Thermosynechococcus vestitus.
Biochim Biophys Acta Bioenerg 1867 149598 149598 (2026)
PMID: 42331212 DOI: 10.1016/j.bbabio.2026.149598
Primary Citation of related structures
7YQ7
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