9M53 image
Deposition Date 2025-03-05
Release Date 2026-02-04
Last Version Date 2026-03-25
Entry Detail
PDB ID:
9M53
Keywords:
Title:
Crystal structure of 1L-myo-inositol 1-phosphate synthase 1 from Oryza sativa
Biological Source:
Source Organism(s):
Oryza sativa (Taxon ID: 4530)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.79 Å
R-Value Free:
0.18
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Inositol-3-phosphate synthase
Gene (Uniprot):RINO1
Chain IDs:A, B, C, D
Chain Length:516
Number of Molecules:4
Biological Source:Oryza sativa
Primary Citation
Chemical inhibition of INO1 reduces phytic acid in rice and wheat grains for enhanced micronutrient bioavailability.
Nat Food 7 163 173 (2026)
PMID: 41639471 DOI: 10.1038/s43016-026-01295-3

Abstact

Phytic acid (PA), the major phosphorus storage compound in cereal grains, chelates essential minerals such as iron and zinc, thereby preventing their absorption in the human intestine and contributing to micronutrient deficiencies. Myo-inositol 3-phosphate synthase 1 (INO1) is a key enzyme in PA biosynthesis, catalysing the pathway's first step and determining PA contents in cereal grains. Although the genetic modification of PA biosynthesis enzymes can reduce PA levels in grains by disrupting enzyme function, it often impairs germination and seedling growth. Here we used a plant chemical biology approach targeting INO1 to reduce PA levels in rice (Oryza sativa L.) and wheat (Triticum aestivum L.) through chemical intervention. From over 1,000 molecules, candidate compounds were identified on the basis of biophysical or biochemical screening. When applied to developing seeds in panicles or spikes, these selected compounds reduced the PA content in grains of rice and wheat. This study presents a strategy for developing low-PA crops and contributes to global efforts to reduce malnutrition.

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Disease

Primary Citation of related structures
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